Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00540 ATGGCAGGAGTTTTTAGAGAAAGAGCACTGTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTGAAGCAGGTGAAGGATATCATACTAGCCATCGAGCCATCTTTTGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCTTCCCCCGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTGAGAGCCATGGAACATTCTCCTCTGTTAATGTCAGTTTTATTGGCATCTTTGAAGGATGAAGACTCTATTGTAGCAGGACAATCAATTACTAGTGGGCAAAAATTATTTTGTGGTGCTTTAAGAGAGATGACATTGCAGTTGCATCGACGGGGTAAAGTTGAGAGATGGCTTGAAGAACTGTGGATGAGGATATTGAAGTTTAAAGATGAGGTTTTGGCAATTGCCATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACGTCCGATACAAATGATCCTCAAAAAGCTATCTCAGAAGGAAATGGGGATGTTTTTAACATTTCATGGCTTGCTGGTGGGTTTCCGATATTGGATACAGTTGTGCTAACGTCGGAAGCTAATAGGATGCTTGGTATTCTTTTGAATTTGTTGCAGACCAGTTCTGTTGCTGGTACATACACAGTAACAATTGTCAGTAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTATCATTCTGTCGGCACTGTTGGAATTTGTTCCAAGTTTTGAGATGGTAAAAGGGCGTCATGCTGCCAGTATCCAGTATTCTATAAGATCTGCACTTTTGGGATTCCTAAGGTGTCTGCATCCAGCGTTTGTAGAGGCGAGTTCACTTGAGAGTTTATATTTTCATTTCGATCGTGCATGTTCCCACATGTATAATCCTCTAGGTTTTTTTCTTGTTGATTTTTACTTTGTTGTGCACCTGGGAATTGCAATACGGAGTCACCATCTTGGTTTTCAGTCGAGAGACAGGTTGCTAAAGGCTTTAAGAGCTATGAATGCTGGAGATGCTGCAGATCAGGTAATCAGGCAAGTGGACAAAATGGTGAAGGCTGCAGATCGAGCTTCACGTGATGCTTTGCTGGGCAAGGATGACCAATCATCAAATCAGCATAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGATGAAGAACTTCCCAATGGCCATGAAGTTACCAAGCAAGTTCGCTTAGGTCCAGATTTTCACCCAATTTCCACAGTGCGAAAAGATGGTTCTCGACAGAGTGCCATCTCTAATGGGACATCCCATGATGTTCCTACATTAGATGTTGAATCAACTCCTGCAGAGCAGATGATTGCAATGATTGGTGCCTTACTAGCTGAAGGGGAGCGAGGTGCAGAATCACTTGAAATTCTGATTTCAAATATTCACCCCGACTTGCTGTCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCCCCCCCTCCAACCACTAGGCATGGGGACTTACCTGTAACTCATCAAGTAAGTAGTCACGTACAAGTTCTGGCACCATCAGCTCCATTGAGTTCTGTGCAAACTTCAGTTTCTACTGCACAAGCTCCTTTTTCTTTGGCCACCTCCGTTGGTTCAACTTATGCTGAGTCTGCTGTCAATAGTCTCCCTGTTGACTCTAAACGCGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGCCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGCAATTTCAAATACATCTGATGTTGATGGTTCCATATCTTTGGGAAAATCTGCTTCGGTTCCTGTTTCTACGACAATCGAGAATTCTTCGGTATTTTCTATATCTAAAACAAAAGTTGAAGAAAAAATCATTGAAACTCCATTCCCGATTGGAACAGATCAACCAACCCCCAAATCAAAATCTCCTGATAGAGCTGAGAAAGTTGACTCTATATTAGAGATTGATGGCCCTCTGGATCCCTTGTCTACTGCTGTTGGAAAAGCTGATGATGGTTTAGTTGCAGTTAATTTGGTCGATGCTTCGGCAACAAAGAGGGATGATACATCGTCTTCTATAGAATACAATCCGTATTCTCCATCAGTTACGAATGCAGCTGCATCTGAAGATACCTGTGAGGAATTGCCTCAGCTTCCTCCATACGTTGACTTGACTCCAGAACAGCAAATAAGTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCGTGCAAGAATTTAAATGGGGCAGACTGCCATCAGAAATGCTTGGCAATAATTGCTCGAATGGTTGCTCAGGTTGATGCTGATGATGATATTGTTCGAATGTTGGAAAAACAAGTCGCTACTGATTACCAACAGCAAAAGGGGCATGAGCTTGTTTTACATGTCTTATATCACCTGCATTCACTCAATATTCTAGATTCAGTGGAAAGTTCGTCTTTTTCTGTGTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCACTGCTAGATGCTTTTCCAGCTTCAGACAAATCTTTTAGCAGACTTCTTGGTGAAGTTCCAGTTTTTCCGGACTCTACGTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGACAGTCCCGATATTGAACGTGTCACGCAAGGTCTTGGCACTGTTTGGAATTTGATTGTGAAACGTCCACATAGTCGGCAAGCTTGCTTAGATATTGCTCTTAAGTGTGCAATGCATCCAGAAGTTAAGGTCCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACGTGTTCCTGTCTGCAGTAGATGGCGTAGACCAGACAGATGTAAAGCCTTTACCATGTGGATCGATTGAGCAAAGCACTGGCGGAGAGGGTGAGAGTCAGGAAACATCCATTTGTGGTTCTCAAGTTTCAGATCCTGTAACCTCAGAAGACAATTCCATGAGGAGTTCACAACCTACAGTTCATGCCAGTTCAACCTTGTCACTTTCAGAAGCTGAAAGACATATTTCTCTTCTTTTTGCTCTATGCGTAAAGAAACCTTGTCTGCTTCAAACTGTATTTGATGCTTATGGACGGGCTCCTAAAGCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGCTCATCTAATGCTGAATTGCTTAGAATAATATCAGATCCACCCCCAGGAAGTGAACATCTTTTAGCAATGGTTCTACAGGTACTAACTCAAGAGACAACGCCTTCTTCCGATCTGATCGCAACCGTTAAACATTTATATGAAACTAAACTGAAGGACGTGACTATTCTCATTCCAATGTTGCCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTCGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACGCCTGTTGAAGTATTGATCGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCATTAAAGAAGATAACGGATGCTTGTTCAGCCTGTTTTGAGCAACGTACAGTGTTCACTCAGCAGGTTCTAGCAAAAGCCTTGAGCCAGATGGTCGAACAAACGCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTACTCTGGTAAGTTTATCCACTCTTTCAGTTGATTTTTTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTTTGGAGGATGCCAAAATTGTGGTTTGGTTTCTTGAAATGTGCATTTGAAACACAACCTCATTCGTTTCGAGTACTATTGCAGTTACCACCGCCACAGCTCGAAAATGCTTTGAACAAATATGTCAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGACGCTCGTACTTCTGGGTATCGAAAACGAAAGGCGTTTGTAG 4080 42.62 MAGVFRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSIVAGQSITSGQKLFCGALREMTLQLHRRGKVERWLEELWMRILKFKDEVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGDVFNISWLAGGFPILDTVVLTSEANRMLGILLNLLQTSSVAGTYTVTIVSSLAAIARKRPVHYGIILSALLEFVPSFEMVKGRHAASIQYSIRSALLGFLRCLHPAFVEASSLESLYFHFDRACSHMYNPLGFFLVDFYFVVHLGIAIRSHHLGFQSRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDALLGKDDQSSNQHNASVDLTRKRPRLLDDEELPNGHEVTKQVRLGPDFHPISTVRKDGSRQSAISNGTSHDVPTLDVESTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLSDIVITNMKNLPKAPPPTTRHGDLPVTHQVSSHVQVLAPSAPLSSVQTSVSTAQAPFSLATSVGSTYAESAVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEAISNTSDVDGSISLGKSASVPVSTTIENSSVFSISKTKVEEKIIETPFPIGTDQPTPKSKSPDRAEKVDSILEIDGPLDPLSTAVGKADDGLVAVNLVDASATKRDDTSSSIEYNPYSPSVTNAAASEDTCEELPQLPPYVDLTPEQQISVRNLAAEKIFDSCKNLNGADCHQKCLAIIARMVAQVDADDDIVRMLEKQVATDYQQQKGHELVLHVLYHLHSLNILDSVESSSFSVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVFPDSTLELLHNLCYCDITDNQGKDSPDIERVTQGLGTVWNLIVKRPHSRQACLDIALKCAMHPEVKVRATAIRLVANKLYRLSYISDRIEQHATNVFLSAVDGVDQTDVKPLPCGSIEQSTGGEGESQETSICGSQVSDPVTSEDNSMRSSQPTVHASSTLSLSEAERHISLLFALCVKKPCLLQTVFDAYGRAPKAVKEAVHEHIPNLITALGSSNAELLRIISDPPPGSEHLLAMVLQVLTQETTPSSDLIATVKHLYETKLKDVTILIPMLPSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVSLSTLSVDFFMEILSKLVNRQVWRMPKLWFGFLKCAFETQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPTLVLLGIENERRL 1359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3052985 3072235 + Carg03022-RA Car09g00540 154277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00540 1359 MobiDBLite consensus disorder prediction 983 1031 - -
Car09g00540 1359 MobiDBLite consensus disorder prediction 569 617 - -
Car09g00540 1359 Pfam Symplekin tight junction protein C terminal 1137 1322 IPR022075 -
Car09g00540 1359 MobiDBLite consensus disorder prediction 384 407 - -
Car09g00540 1359 MobiDBLite consensus disorder prediction 991 1031 - -
Car09g00540 1359 MobiDBLite consensus disorder prediction 576 591 - -
Car09g00540 1359 MobiDBLite consensus disorder prediction 437 458 - -
Car09g00540 1359 MobiDBLite consensus disorder prediction 599 617 - -
Car09g00540 1359 MobiDBLite consensus disorder prediction 438 458 - -
Car09g00540 1359 Pfam Symplekin/PTA1 N-terminal 97 293 IPR032460 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00540 K06100 SYMPK; symplekin - csv:101202828 2175.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00306 Car-Chr3:4108918 Car09g00540 Car-Chr9:3052985 1.34E-57 dispersed
Car04g01230 Car-Chr4:7070331 Car09g00540 Car-Chr9:3052985 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00540 Car_Chr09 FPKM 2.962134 3.4027 0.271104 0.353394 6.909442 7.583747 6.214039 1.009134 1.066758 0.98135