Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00542 ATGTCGTCTCTACATTTTCTCTCTCTTCTCTCTCTCCTCGTCGCCTTTCTCACCGGAATCAAATCCGACGACGAACGTCAAATCCTAACCAGACTCATCTCCTCTCTCCACAACAGAGACGCTGCCGTCTTCAACAACTGGAAACTCCAAACCCCCAAATGCAATTTCACCGGAATCGCCTGCAATTCACACGGGTTCGTCAACGAAATTAACCTCTCCAAATGGGGTTTAACCGGCGTTCTTCCTTTTGATTCCGTTTGCCAGTTGCCGGCGTTGGAGAAGCTGATTCTTCGCGCCAATTCCCTGCACGGCGAAGTGACAGAGAGTTTAAACAATTGTGTAAAACTGAAGCATTTGGATCTCAGCAGCAATGGCTTCTCCGGCTCTTTCCCGGACATACATTCGTTGCCGGAATTGGAGTATCTGTATTTGAATTCAAGTGGGTTTTCCGGTAAGTTTCCATGGAAATCCGTCGGGAATTTGAGCGGTTTGATTGAGCTGAGCGTCGGAGATAACCCTTTTGAAAACGCTACTTTTCCGGTGGAGGTCACCAATTTGAAGAGGCTTAATTTGCTGTATTTGTCGAATTGTAGCTTAACAGGGGAAATTCCAAGATCTATTGGTAATCTCACGGAGCTTCTTAGTTTTGAATTTTCCGACAATTTTGTAACAGGGAATATTCCGCCGGAGATTGGTCGCCTGCAGAAGCTCTGGCAGTTGGTGTTCTATAATAATCAATTAACGGGGACACTTCCGGTGGGATTAAGAAACCTTACCGGCCTTAAGAATTTCGATGCTTCGTTGAATTATATCCATGGGGATTTGTCGGAGTTGAGGTTTTTGACGAATTTGGTTTCTCTGCAAATGTTTGATAATCAATTTTCCGGCCATGTTCCGGTGGAGTTTGGGGAGTTTAAGTCGCTGGTTAATCTGTCCCTTTATCGGAATAGGCTTACGGGGCCTCTGCCGCAATCCATTGGTTCTTGGGCGGCGTTTGATTTCATTGATGTGTCGGAGAATTTCTTGACGGGATCGATTCCTCCGGATATGTGTAAGCAAGGGACGATGCAGAAGCTTTTGATTCTTCAGAACAATTTCTCCGGCGAGATTCCGGCGACTTACGCTAATTGCTCCACTTTAGACCGATTTAGAGTCAGTCAGAACTCGCTCACCGGGGTTGTTCCGTCGGGAATTTGGGGATTGCCGAATGTGAATATAATTGATCTCGCGTCAAATCGGTTGACTGGTTCGATCACTTCTAATATTGGAAAGGCTGTGTCTCTCTCTGAATTTTACGTCGGAAATAATCGGTTCTCAGGTCGATTGCCATTGGAGATTTCACAAGCGGAATCTCTTGCTTCGGTTGACTTGAGCAATAATCAGTTCTCTGATGAGCTTCCGATGACTATCGGTGACCTCAAGAATCTCGATAGCCTCGAATTGCAGGGGAATAAATTCTCTGGTTCGATTCCGGAAACGATTGGCTCGTGTAATTCTCTGAGTATCGTCAATTTGGCAGAGAATTTCTTCTCTGGACAAATTCCTTCGTCTCTAGGTTTTCTTCCGGTTCTCAACTCTTTGAATCTCTCCAATAATGACCTATCAGGTGAAATCCCCCCGACATTTTCGCATTTGAAATTGAGTCTTCTTGATCTTTCCAACAATCAATTATCTGGTTCAGTTCCTCTATCGCTATCGAATGGAGCTTACAACGAAAGCTTCGCAGGAAATCCTGGCCTCTGTAGCGAGACCGATGTCTTTTTACGGCGATGTTCAAAGAGTTCTGGCACGTCCAAGGACGTTCGAATACTCGTCATTGGTATCGTCGTTGGATTAATTCTTCTCAGTGCGACACTATGGTGCTTCATAAAATTGAGAAAGAGCGACAAATATCGAGATCGGTCGCTTAAAAAGGAATCGTGGGACCTAAAATCATTCCACGTAATGACGTTCACAGAAGACGAGATACTGGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAATGTCTACAAAGTGACGGTTGGAAATGGGAAAGAGTTAGCCGTGAAGCATATTTGGAACATCGATCCATACGAGAGAATGAACAACAACAATAATCGGAGCTCCTCACCGATTCTACCGAAACAGAGAGCAAAGTCGTTGGAATTTGACTCGGAGGTAAAGACTCTAAGCTCAATCCGCCATGTGAATGTAGTGAAGCTATACTGCAGCATTACGAGCGAGGTCTCAAGCATGTTGGTATACGAATATATGCCTAATGGAAGCTTATGGGACAAGCTTCACACGTCGACAAAAATGGAGTTAGATTGGAAAACAAGATACGAAATCGCAGTCGGAGCGGCAAAAGGATTAGAGTATCTTCATCACGGTTGCGACCAACCAGTGATTCACAGAGATGTCAAATCCAGCAACATACTTTTGGATGAATTTCTCAAACCCAAAATAGCCGATTTCGGGCTTGCCAAAATCCTCAACACAAGTGGGTTCAACGAGACAAGCCATATCGTTGCAGGCACTCCCGGCTACATCGCACCAGAGTATGGATACAGTTACAAAGTGGACGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTATTGATGGAGTTAGTGAGCGGAAAAAGAGCGATCGAGGCGGAGTTTGGAGAGAACAAGGAGATGGTGGAGTGGGTATCAAACAATTTGAAGAGCAGAGAAAGTGTATTAAAGTTGGTGGATTCAAGAATTGGCGATGCATATAAAGAGGAAGCCATAAAGGTATTAAGAATAGGAATATTGTGCACAGCCAGGGTTCCTTCCATGAGACCCACCATGAGGAGTGTGGTTCAAATGCTTGAAGAAGCCCACCCCTGTCGCCTGCTTGGGATACTCATTGCCAAAGATATCAACAACATTCATATCTAA 2916 44.89 MSSLHFLSLLSLLVAFLTGIKSDDERQILTRLISSLHNRDAAVFNNWKLQTPKCNFTGIACNSHGFVNEINLSKWGLTGVLPFDSVCQLPALEKLILRANSLHGEVTESLNNCVKLKHLDLSSNGFSGSFPDIHSLPELEYLYLNSSGFSGKFPWKSVGNLSGLIELSVGDNPFENATFPVEVTNLKRLNLLYLSNCSLTGEIPRSIGNLTELLSFEFSDNFVTGNIPPEIGRLQKLWQLVFYNNQLTGTLPVGLRNLTGLKNFDASLNYIHGDLSELRFLTNLVSLQMFDNQFSGHVPVEFGEFKSLVNLSLYRNRLTGPLPQSIGSWAAFDFIDVSENFLTGSIPPDMCKQGTMQKLLILQNNFSGEIPATYANCSTLDRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNRLTGSITSNIGKAVSLSEFYVGNNRFSGRLPLEISQAESLASVDLSNNQFSDELPMTIGDLKNLDSLELQGNKFSGSIPETIGSCNSLSIVNLAENFFSGQIPSSLGFLPVLNSLNLSNNDLSGEIPPTFSHLKLSLLDLSNNQLSGSVPLSLSNGAYNESFAGNPGLCSETDVFLRRCSKSSGTSKDVRILVIGIVVGLILLSATLWCFIKLRKSDKYRDRSLKKESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKELAVKHIWNIDPYERMNNNNNRSSSPILPKQRAKSLEFDSEVKTLSSIRHVNVVKLYCSITSEVSSMLVYEYMPNGSLWDKLHTSTKMELDWKTRYEIAVGAAKGLEYLHHGCDQPVIHRDVKSSNILLDEFLKPKIADFGLAKILNTSGFNETSHIVAGTPGYIAPEYGYSYKVDEKSDVYSFGVVLMELVSGKRAIEAEFGENKEMVEWVSNNLKSRESVLKLVDSRIGDAYKEEAIKVLRIGILCTARVPSMRPTMRSVVQMLEEAHPCRLLGILIAKDINNIHI 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3080351 3083356 + Carg03024-RA Car09g00542 154279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00542 971 ProSiteProfiles Leucine-rich repeat profile. 115 137 IPR001611 GO:0005515
Car09g00542 971 ProSiteProfiles Protein kinase domain profile. 660 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00542 971 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515
Car09g00542 971 Pfam Leucine Rich Repeat 185 210 IPR001611 GO:0005515
Car09g00542 971 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Car09g00542 971 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Car09g00542 971 Pfam Protein kinase domain 662 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00542 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car09g00542 Car12g00210 CCT
Car05g00517 Car09g00542 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02391 Car-Chr4:19144042 Car09g00542 Car-Chr9:3080351 0 dispersed
Car09g00542 Car-Chr9:3080351 Car19g00389 Car-Chr19:5706454 0 dispersed
Car09g00542 Car-Chr9:3080351 Car09g00543 Car-Chr9:3084391 0 tandem
Car12g00210 Car-Chr12:1325059 Car09g00542 Car-Chr9:3080351 3.33E-160 wgd
Car04g01227 Car-Chr4:7048174 Car09g00542 Car-Chr9:3080351 3.50E-17 wgd
Car05g00517 Car-Chr5:3004746 Car09g00542 Car-Chr9:3080351 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89088 PF00069 Pkinase 7.20E-42 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00542 - - csv:101223100 1503.8