Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00543 ATGGCCCTCCTTTTCTACTTCTTCTTTCTTCTTCTTTCTTTCATTTCTCAACCCATTGGAGGTGATCGATCTCTGTTTCTATCTATGATGCAAGAACTTTTGATCGGGAATTCTTCGCCGTCCGATTGGGATGTTTCCGGCGGGAGTTTGTTCTGTAATTTCACCGGCGTTACCTGTAATGAAAAGGGGTTTGTGGTTGGGATTGATCTCTCCGGCAGGGAGGTTTCGGGGAAGTTTCCGGCGGATGTGTGTACTTATTTGCCGGAGTTGAGAGTGTTGCGACTTGGGCAGAGTGGCTTACGAGGGACGTTTCCACGTGGGATAACGAATTGCTCTGTTTTGGAGGAATTGGATATGAGTTTTCTGTCTATGACTGGGACGTTACCGGATTTCTCGCCGTTGAGAAACCTTAGGATTCTCGACATGTCGTATAACAACTTCACCGGCGACTTTCCGTTGTCGGTTTTCAGTTTGACGAAGCTTGAGAGGCTGAATTTCAACGAGGATAATAATTTCAATATGTGGCAGTTGCCGGAGGATTTGTCGGAGTTGACGAAGATGAAATCGATGGTGTTGACGACTTGTATGTTGGGGGGGAGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACTTGGAATTAAGCGGCAACTTCCTCGCCGGAGAAATTCCGAAAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAATCGGGGGAATTCCAGAGGAGATCGGGAATTTAACAGAACTCGTGGACTTGGACATGTCGGTCAACATGTTGACTGGGAAGCTTCCTGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAGCTTTACAACAACTCCTTAACAGGGGAGATTCCCATTTCAATTTCGAACTCAACAACGCTCACTATGTTATCGCTTTACGACAACTACATGACCGGAGAAGTTCCAAGTAATTTGGGACAATTTTCACCCATGTTGGTTCTCGACTTGTCGGAAAATCATTTCTCCGGTCCCTTACCGACAGATGTCTGTAGAGAAGGTAAATTAATGTATTTTCTCATGTTGCAAAATAAATTTTCCGGTCAAATCCCGCCGGCGTATGGTAAATGCCAGTCACTTTTACGGTTTCGAGTCAGCTGGAATTTTCTAGAAGGTCCGGTGCCGGCGGGACTTTTGGGTCTTCCACATGCTTCGATTATTGATTTTGCTAACAATAATCTTAGCGGTGAAATTCCGAATTCTTTTGCTGAAGCTAGGAATCTGTCGGAATTGTTCATGCAGAGTAACATGATTTCCGGCGAGTTGCCGCCGGAAATCTCTAAAGCGACCAATTTGGTTAAGATTGATCTTAGCAACAACTTCTTGTCTGGTCCGATTCTTTCTGAAATTGGGAATCTCAAGAGGCTTAATTTGCTGCTTTTGCAACGAAATCACCTGAATTCTTCAATACCCACTTCACTTTCCGAGATTAAATCTCTTAATGTTCTTGATTTATCCGACAATCGACTGTCCGGTAACATCCCGGAAAGCCTCTGTGAATTGTTGCCGAACTCAATCAATTTCTCGAACAACCAACTCTCCGGTCCGATTCCTCTGTCTTTGATCAAATATGGGTTAGTGGAGAGCTTTTCCGGCAACCCAGGATTGTGCGTTTCGATTTATTTAGATTCATCCGACCAAAAATTCCCAGTTTGTTCTCAAAACCTCAACAAAAAACGGCTGAATTCCATCTGGACAATCGGAGTATCAGCGTTCATAATCTTCATCGGAGCTGCTCTGTATCTCCGACGACGATTCAGCCGAGAAAAAACAGTAATGGAACAGGACGAGACACAATCTTCATCGTTTTTCTCATACGATGTCAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGAGAAGAACATCGTCGGCCATGGCGGCGCCGGTACAGTGTACAAAATTGAGCTAAGCAGCGGCGAAATCGTCGCCGTTAAAAGGCCGTGGAGACGAAAGGGCAAAGACCGACGGTCGGATCAGGAGCAGCTGTTCTTGGACAAAGAGCTGAAAACGGAAGTGGAGACATTGGGGAGTATAAGGCATAAGAACATCGTGAAATTATACTGCCATTTCTCGAGCTTGGACTGCAGCCTTTTGGTGTATGAGTACCTTCCCAACGGCAATTTATGGGACGCCCTGCACAAGGGTTGGGTTCATTTGGACTGGCCGACACGGCACCAGATTGCGTTGGGCATAGCCCAGGGCTTGGCTTACCTTCATCATGATCTATCGCCTTCCATAATTCACAGAGACATTAAAACCACCAATATACTGTTGGATGTTCATTATCAGCCTAAAGTTGCTGATTTTGGCATTGCTAAAGTCTTGCAAGCTCGAGCGGGTAAGGACTCGACCACCACCGTCATCGCCGGCACTTACGGCTATCTCGCCCCAGAATATGCATATTCCTCGAAAGCCACGACGAAGTGCGACGTGTATAGCTTTGGAATCGTGTTGATGGAGCTGATAACAGGGAAGAAGCCAGTGGAGGCGGAGTTCGGAGAGAACAAGAATATTATATATTGGGTTTCGAATAAAGTAGACACGAAGGAAGGAGCAGTAGAAGTTTTGGACAAGAAAGTTTCGTTATCGTTTAAAGATGAGATGATTCAAGTTCTAAAGATTGCAATTCGGTGCACGTACAAGAATCCTGCACTTAGACCCACCATGAAGGATGTGGTACACTTGTTGATTGAAACCGACCCTTGCAAACTCGATTCTCACAACAAATGCCCTAAACACACTACCACCACCACCAGAATCAAGAACTCATTTGACCTATGA 2862 45.21 MALLFYFFFLLLSFISQPIGGDRSLFLSMMQELLIGNSSPSDWDVSGGSLFCNFTGVTCNEKGFVVGIDLSGREVSGKFPADVCTYLPELRVLRLGQSGLRGTFPRGITNCSVLEELDMSFLSMTGTLPDFSPLRNLRILDMSYNNFTGDFPLSVFSLTKLERLNFNEDNNFNMWQLPEDLSELTKMKSMVLTTCMLGGRIPATIGNMTALVDLELSGNFLAGEIPKEIGNLKNLRQLELYYNSLIGGIPEEIGNLTELVDLDMSVNMLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGEVPSNLGQFSPMLVLDLSENHFSGPLPTDVCREGKLMYFLMLQNKFSGQIPPAYGKCQSLLRFRVSWNFLEGPVPAGLLGLPHASIIDFANNNLSGEIPNSFAEARNLSELFMQSNMISGELPPEISKATNLVKIDLSNNFLSGPILSEIGNLKRLNLLLLQRNHLNSSIPTSLSEIKSLNVLDLSDNRLSGNIPESLCELLPNSINFSNNQLSGPIPLSLIKYGLVESFSGNPGLCVSIYLDSSDQKFPVCSQNLNKKRLNSIWTIGVSAFIIFIGAALYLRRRFSREKTVMEQDETQSSSFFSYDVKSFHRISFDPREIIESMVEKNIVGHGGAGTVYKIELSSGEIVAVKRPWRRKGKDRRSDQEQLFLDKELKTEVETLGSIRHKNIVKLYCHFSSLDCSLLVYEYLPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLSPSIIHRDIKTTNILLDVHYQPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAVEVLDKKVSLSFKDEMIQVLKIAIRCTYKNPALRPTMKDVVHLLIETDPCKLDSHNKCPKHTTTTTRIKNSFDL 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3084391 3087558 + Carg03025-RA Car09g00543 154280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00543 953 Pfam Protein kinase domain 646 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00543 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Car09g00543 953 ProSiteProfiles Protein kinase domain profile. 644 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01227 Car-Chr4:7048174 Car09g00543 Car-Chr9:3084391 4.33E-11 dispersed
Car05g00517 Car-Chr5:3004746 Car09g00543 Car-Chr9:3084391 0 dispersed
Car09g00543 Car-Chr9:3084391 Car12g00210 Car-Chr12:1325059 0 dispersed
Car09g00542 Car-Chr9:3080351 Car09g00543 Car-Chr9:3084391 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89089 PF00069 Pkinase 2.00E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00543 - - cmax:111477315 1844.32