Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00545 ATGTCTGCTCCATTGACTCCATCAAAGAGATCACGTGATCGGAACATTGTCAAGTCCAATGGGAAAGGAAAGTGGCAGAAGACATCAGGGTCTCGTTCGCATAAGCAATCCTTCAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTTCTCTTTCCTGTTTCCAGAATTGACAGCCTTGTCGGTGGAGATGGAGATGTTTTATCTAAAATTAGTGAAGAAACAGGCGTAGAAATCAGAGTAGAAGACACTATCCCTGGATGTGATGAGAGAATTGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCCGAGGAGAAGAATAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGAGGGTGATAATGCCGAGTGGACAAAGAAGGAAGACAAAGTTTCTCTTCCTGGGGAAGAATCTAAACAAAAGGAGGTTCCATATTTGCAATTGCGAAAAGCCCTTTTTCTTGTTTCTGAGAAGATTTTTGATGAAGAACCGGAGGCAGATGGGGCCGATAGTGAAGGTGATAAGCTGTCTACATTTGTTTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAATCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGTGCGCAACTTCTAGTGATGAGCTAGTCCAGTTCCTGCTTTTTATTTACATGATGTTACGAATGCAGATTAGCGGAGGAAATGATGTGGTGAAGAGAGCTCTTGTACTTGTTTTTCAGCAGCTAATTGAAAATTCACCCCATGATAAGGATCCTGTCGCCTCAAGCATGACTGCACAGTCATCACATTCATCTGGCCAGTCTCGTTCTTGGGCTCATGATTATCCTCTGGGTAGTAGTTTTTTTAATGCTCATGCAGGCCCTTACTCTGTGCCTCGTGAAGTTGGCAACTTTCATTCCAGTACACCGTCTCTTGCTCCTAATAAACAGTATGAAACCAGCATTCCTGGTCGAATCAAACCTTCTCAAGAAATTTTAAGTTTTCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGTAGTAGTAAAGGCTCTTCAGCAAGAGACAGGCTGTGACATCAAAGTTATTGAAAGTGCCTTGGACCCAGACGATCGCATTATACTTGTAACTGGTCCTGCGAATCCAGATGACAGAATATCACCTGTACAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGTACCAGACAGCAAGGAGCAGAACTTGGTGGCTAGGTTTCTTGTTTACTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGGTCCCAAAGTGTGTTGGTGAAGATGAAGAAATGGTCCAGATAAACGGAGATCCTGAAACAGTTCAAGATGCTATGTTGCAGATTACTACTCGGCTGAGGCAGCATTTTTTCCGTGATGCATTTCCATCAGTTAATAATCATCCAAATCCTGCATTTGTTGATAGACTTCCTTCATTTCCTTCGTATTTTGGAAGGAGGGAATTGTCACCTCCAGGAATCTATTCAAATTTAGGACCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGAGATGATCGACCTGCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGACTAGTTGAAGGTGGTGTTGGCTTGCCAGACTTTACAGGAGCCCATCATAGGAGAATCGCTGGATTTGGAGGAGTAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGCTGTTCCTCGAGACCTTGTCCCCGTTATTTGTGGAGAGAATGGTGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACGATTACTGAGCCAAAGCAAGGAGCTGTTGAAACTGTGATTATCATTTCTGGAACGCCTGAGCAAACCCATGCGGCTCAGAGTCTTATTCAAGCTTTTGTAATCAGCGAGACGGAGTCTAGTTGA 2121 42.95 MSAPLTPSKRSRDRNIVKSNGKGKWQKTSGSRSHKQSFKLSPGYAVFRVLFPVSRIDSLVGGDGDVLSKISEETGVEIRVEDTIPGCDERIVVIGGSNQETEVNPEEKNKEDNKNSEVEENEGDNAEWTKKEDKVSLPGEESKQKEVPYLQLRKALFLVSEKIFDEEPEADGADSEGDKLSTFVLRLLVLSSQVGCLLGKGGSVIKQMSSDSGAQIRILPRDKLPPCATSSDELVQFLLFIYMMLRMQISGGNDVVKRALVLVFQQLIENSPHDKDPVASSMTAQSSHSSGQSRSWAHDYPLGSSFFNAHAGPYSVPREVGNFHSSTPSLAPNKQYETSIPGRIKPSQEILSFRLLCPSERVGNVIGKGGVVVKALQQETGCDIKVIESALDPDDRIILVTGPANPDDRISPVQDAVFRVQARIVKAVPDSKEQNLVARFLVYSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQVPKCVGEDEEMVQINGDPETVQDAMLQITTRLRQHFFRDAFPSVNNHPNPAFVDRLPSFPSYFGRRELSPPGIYSNLGPSFHKFDALSGIPSLSDLRDDRPAFLHRPGAPLLSDRKPWSSQGLVEGGVGLPDFTGAHHRRIAGFGGVNNPAIITSTTVEVAVPRDLVPVICGENGECLKQIRQISDAKITITEPKQGAVETVIIISGTPEQTHAAQSLIQAFVISETESS 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3096309 3101772 - Carg03027-RA Car09g00545 154282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00545 706 MobiDBLite consensus disorder prediction 276 295 - -
Car09g00545 706 ProSiteProfiles Type-1 KH domain profile. 182 263 - -
Car09g00545 706 ProSiteProfiles Type-1 KH domain profile. 44 110 - -
Car09g00545 706 MobiDBLite consensus disorder prediction 94 142 - -
Car09g00545 706 ProSiteProfiles Type-1 KH domain profile. 631 695 - -
Car09g00545 706 MobiDBLite consensus disorder prediction 103 141 - -
Car09g00545 706 ProSiteProfiles Type-1 KH domain profile. 435 504 - -
Car09g00545 706 MobiDBLite consensus disorder prediction 1 38 - -
Car09g00545 706 ProSiteProfiles Type-1 KH domain profile. 350 417 - -
Car09g00545 706 MobiDBLite consensus disorder prediction 274 295 - -
Car09g00545 706 MobiDBLite consensus disorder prediction 21 38 - -
Car09g00545 706 Pfam KH domain 438 504 IPR004088 GO:0003723
Car09g00545 706 Pfam KH domain 353 404 IPR004088 GO:0003723
Car09g00545 706 Pfam KH domain 47 100 IPR004088 GO:0003723
Car09g00545 706 Pfam KH domain 185 230 IPR004088 GO:0003723
Car09g00545 706 Pfam KH domain 633 696 IPR004088 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00545 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1124.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02668 Car-Chr4:20767662 Car09g00545 Car-Chr9:3096309 1.19E-11 dispersed
Car09g00545 Car-Chr9:3096309 Car11g01172 Car-Chr11:9396894 1.10E-90 dispersed
Car12g01103 Car-Chr12:10746865 Car09g00545 Car-Chr9:3096309 4.64E-13 dispersed
Car04g01225 Car-Chr4:7033873 Car09g00545 Car-Chr9:3096309 4.60E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00545 Car_Chr09 FPKM 23.819403 28.056681 23.29339 24.532906 13.286701 13.591855 14.132883 54.765942 48.741299 50.47625