Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00553 ATGCTTCTCCGAGCGTCCCCTCTTCTTCGCGCCTCCCACCGTCCATTCTCCTCTGGGGTTCACATGGCGCTAGCTGCCCATCTCCCTGTCTCTCCCAACCGTCAAAGTTTACATTCATGGCGATCTTCTTCGCACTTGCCGCCTGTTTGTCAAGCGAATGGCTACGACCGCATTTCGACCAAAATAACATTTCCACAATTTGTTCGGAGTTTCTACGTCTTGTCGGGAACATACAATAAGGTACAGAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATAGAAAGGTGAGGAGACGAGTCCCCAAAACCAAGAAAAAGGAATTAGAGCTCAACGTCAGTATCTGTATTGAAGAAAAGTTGCCGGACGACCCTGAACTTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCCAAGGCTCTGAAGTTAGCTTTCAACAATTTAAAGGATTCACAATACAAAACTCGAGATAGTTCAATAAACGATGTTGGTTTATTTGAAAGTGTTGAGATGTCCGTGCTACTTTGTAACGACGAGTTTATTTGTAAACTTAACAAAGAATGGAGGGACGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTTCCAATTCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCGAGGCAGGCGGAGGAACGGGGACACACACTCCTTGATGAGATTCGGATACTCCTGGTGCACGGATTGTTGCATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAAAAGGAGGAGGAACTACTTTTGAAGAGTTTAGAGTGGAAAGGGAAAGGGCTGATTCAGAGTGCAATTGATGCTGAAACTAATTCAAACTCAGTTGCAGAAGTTTCAGATGACCATGTTCTCTGTGTACGTTCTTACTATTCACATGTTAAAGACAGGAAAAAAGAAGGAAGTCTCCGATTCTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCCCTGAAGGAGGCCTTGTCAAGAGGTGTGAAAGTTGTTATAGCTACTGGAAAGGGACTACTTGTTTATGGTAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGATCAAGATATCTGCAGAGAGGCATGCCTTTATTCTTTAGAGAAGAATGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGGCAGAGGTCATGTCCTCGGTTGATAATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTTTTCTTGGACACTGCCGAGGGAGTTTCACGCATCCTTCGGCCATACTGGTCAGAAGCATCAGGGGAACACGCCTCAGTTGTTCAGGCTGTACCAGATATGCTCGAGATCGTCCCCTGTGGAACCTCAAAAGGTAGCGGAGTAAAATTGTTGCTCGATCATTTGGGAGTTTCTTCCGAGGAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTGGAATTGGCATCTCTTGGAATTGCTATGAGCAATGGAGCAGAGAAAACAAAGGCTGTTGCTAACTTAATTGGTCCCAGCAATGATGAAGATGGTGTTGCAGAGGTCATATACAGATATGCATTCTAG 1725 44.12 MLLRASPLLRASHRPFSSGVHMALAAHLPVSPNRQSLHSWRSSSHLPPVCQANGYDRISTKITFPQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVAEVSDDHVLCVRSYYSHVKDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTVKALKEALSRGVKVVIATGKGLLVYGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRILRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASLGIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3125463 3132007 - Carg03035-RA Car09g00553 154290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00553 574 Hamap Endoribonuclease YbeY [ybeY]. 109 287 IPR002036 GO:0004222|GO:0006364
Car09g00553 574 Pfam haloacid dehalogenase-like hydrolase 379 569 - -
Car09g00553 574 Pfam haloacid dehalogenase-like hydrolase 336 375 - -
Car09g00553 574 ProSitePatterns Hypothetical cof family signature 1. 335 346 - -
Car09g00553 574 ProSitePatterns Uncharacterized protein family UPF0054 signature. 247 257 IPR020549 -
Car09g00553 574 ProSitePatterns Hypothetical cof family signature 2. 523 545 - -
Car09g00553 574 Pfam Endoribonuclease YbeY 168 277 IPR002036 GO:0004222|GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00553 - - - cmo:103503611 925.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00553 Car_Chr09 FPKM 48.747204 46.531811 59.918346 65.342079 46.157093 51.206703 47.714451 73.944893 77.255341 76.015373