Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00558 ATGATGGCTGTCACTTCCGCCTGCAAGGATTCTGCTACCAAGATCGGCAGCTTGGATAATGGGAAGTATGTTCGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCAATGCGCCGCCAGCAGCTCATTCGGGAGTGCCCAATTCTCTCCGACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAACCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCCCGTTTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATCGACTTCTAATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGTGAGTCTGTGGTGACAAGTGGTCAGCAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTGTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTTGAACCCACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGCTACACATCGGTTTTGGAGGATGGCAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTATCAAGTGGGTATTTGATAAGACCTTGTGAGGGTGGTGGATCAATAATCCATATGGTTGATCACATGGACTTAGAACCATGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCGGTAAATGGGTTTGCAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATGTCATATTCTAATGGCTTTCCATCTATGAGCAATGCCGTGCTTTGTGCAAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGTTCAGAATGGGCCGACAGCAGTATTGATGCCTACTCAGCTGCAGCAATTAAGACCGGCCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGATTATTCTTCCCTTGGCACAAACCGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGAGCCACTACAGAGACGATAAACTCATGCCTGGTGACATCTTCCTCCTCCAACTTTGCAACGGTGTGGACGAGAATACGGTTGGTACTTCTGCTGAACTCATCTTTGCTCCGATTGACGCCTCTTTTTCCGATGATGCACCAATTCTACCATCTGGCTTCCGCATCATTCCTCTCGATTCTGGCATGGATGCTTCAAGTCCATACCGCACGCTTGATCTTGCTTCGGCTCTTGACGTTGGACCTGCTGGGAATAGAGCTTCTGGAGACTGTGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTGCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGGAGCATTATAGCGTCTGTTCAGAGGGTGGCGCTGGCTCTATCGCCTTCGAATTTCGGTCCTCATGCTAACCTTCAGACACCGGCTGGTGCTCCTGAAGCACAAACACTTGCTCTTTGGATCTCTCAAAGCTATAGGTGCTTTATGGGCATGGAATTACTGAAAAATGAAGGACGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGCAAGCCTTGCCAAATTTCACATTCGCTAATCAATCTGGACTCGACATGCTCGAGACGACCTTGGTGGCTCTCCAAGACATTACTTTGGAGAAGATTTTTGATGATAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCACGGATAATGCAGCAGGGCTTCATTTGTCTTCAAGGGGGTATCTGCTTGTCAAGCATGGGAAGGGCAATATCCTACGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2529 46.54 MMAVTSACKDSATKIGSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSDIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLSSGYLIRPCEGGGSIIHMVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFADEGWSLLENDGIDDVTLLVNMSHGKTMMGANMSYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQIILPLAQTVEHEEFMEVVKFENVSHYRDDKLMPGDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPYRTLDLASALDVGPAGNRASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLALWISQSYRCFMGMELLKNEGRESVLKSLWHHSDAVMCCSLQALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFICLQGGICLSSMGRAISYEKAVAWKVLNEEENAHCICFMFMNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3161431 3166424 - Carg03040-RA Car09g00558 154295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00558 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Car09g00558 842 Pfam START domain 166 374 IPR002913 GO:0008289
Car09g00558 842 Pfam MEKHLA domain 701 841 IPR013978 -
Car09g00558 842 Coils Coil 91 118 - -
Car09g00558 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Car09g00558 842 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00617 Car-Chr8:3969220 Car09g00558 Car-Chr9:3161431 0 dispersed
Car09g00558 Car-Chr9:3161431 Car17g00717 Car-Chr17:6541955 0 dispersed
Car04g01210 Car-Chr4:6957154 Car09g00558 Car-Chr9:3161431 6.10E-53 transposed
Car04g01209 Car-Chr4:6951162 Car09g00558 Car-Chr9:3161431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4071 PF01852 START 3.30E-53 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00558 K09338 - csv:101218438 1647.1