Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00561 | ATGTCAGCAACACAACCATCACAAATCACCCAACCATCCTCCTCTGACACCAACGCCCAATCCAACCCCAACAACAAGCGCGTTCGTGATTCCAGCAAGCACCCACTCTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGAACCTTCCCCACCCCAGAGATGGCCGCTAGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCTATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCTGCCAAGGCCGCCCACATGGACCCTTTTCAATACTCCACCGACGACTCCGACGAGCTCAGCGAAATCGTCAAGCTGCCTAGTCTCACCACCAATTACCTTAATAACGAGTTTGTCCTCATGGACTCCACCGATGGCTGGGTTTACCCGCCCCCGTGGTTACGAACCATGGACGATTCCAGCTACAACAACAATAACAACAACAACAACATTATCGACGAAATGGGAATCGGAGACAGTAATTTCTTATGGGATTATTAA | 600 | 53.67 | MSATQPSQITQPSSSDTNAQSNPNNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFQYSTDDSDELSEIVKLPSLTTNYLNNEFVLMDSTDGWVYPPPWLRTMDDSSYNNNNNNNNIIDEMGIGDSNFLWDY | 199 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3186595 | 3187194 | - | Carg03043-RA | Car09g00561 | 154298 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00561 | 199 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Car09g00561 | 199 | ProSiteProfiles | AP2/ERF domain profile. | 36 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
| Car09g00561 | 199 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Car09g00561 | 199 | Pfam | AP2 domain | 35 | 85 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g01271 | Car-Chr5:11800091 | Car09g00561 | Car-Chr9:3186595 | 1.99E-53 | dispersed | |
| Car08g00611 | Car-Chr8:3940907 | Car09g00561 | Car-Chr9:3186595 | 1.17E-52 | dispersed | |
| Car09g00561 | Car-Chr9:3186595 | Car10g00596 | Car-Chr10:3011050 | 6.06E-61 | dispersed | |
| Car17g00485 | Car-Chr17:3733535 | Car09g00561 | Car-Chr9:3186595 | 3.96E-42 | dispersed | |
| Car12g00237 | Car-Chr12:1595860 | Car09g00561 | Car-Chr9:3186595 | 3.95E-68 | wgd | |
| Car04g01205 | Car-Chr4:6934587 | Car09g00561 | Car-Chr9:3186595 | 1.50E-88 | wgd | |
| Car05g00538 | Car-Chr5:3137565 | Car09g00561 | Car-Chr9:3186595 | 3.72E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4073 | PF00847 | AP2 | 4.50E-14 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00561 | K09286 | - | csv:101217333 | 264.618 |