Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00562 ATGAGGCTCGCTTGTTGCCTCCGGAGCTCACTGAAGGAACAAGTGGTCATGGTCATCTCTCTTAACTCAGACAGTGAAATGAGTTCATGTTTGGCTAGATGTTCATCAACTCGGCTGGAGAACATAGATGAAAATAGCCCTGCAAATTGGTTGCCGGGTTCGTTTGTTCTACCTGAAACTCCAATTGAGTCCATGGAATTTCTTGGCAGATCTTGGAGCCTGTCTGCCAAAGAGCTCTCTAAGGCTCTTTCCACTGCCCATGATACTCCTAGTCGTCTTCAGAACTCAGTGATTGGCTTTCTTAGTGCTGATGCACATGATTCAAATTCTTCAGTCTTGAGTGAGCCAGTGAGATACCTCTTCCTCCTCTCTTATATTGGAGAGGGGAACAAAGCATTCCTTAAAAGGCGGTGGGTTTGGGCTGTTACAAATGGTAGCAAAGCCAAGCACCGAGTGGTGTGCCAGCGAGAACGCTGGCCTCCCTTGGAGCTACTTCGACGCTTACCCAGTGGAGATAGTCCTCCAGCTTCACCAAGAGGAAGTGAAGAAATGAAGGAACTTTTGTTACTTCACCAAGCATTGAACCCAGATTTCCTTTCCAACCAGCAACTACTTGGAAATGGGCTATACAAGAGCATATTAAGAGGTAATAAAACATTGGGAAGGTGGATGAAGGATCAAAAGGAGAGGAAGAAGCAGGAAATCAGATCACAGAATGCTCAATTACATGCAGCTGTATCTGTAGCAGGTGTTGCTGCTTCAGTAGCAGCATTCATTGCATCACTCTTATCTTGTGAAACATCATCGGGTAATCACAAATGGCCTTCAAAGACATCATCAGCCATGGCTTCTGCAGCTGCCCTTGTCGCATCTCATTGCATAGAGATGGCAGAGGAAATGGGAGCTAGCCATGAACATATCTTGAATGTAGTTAACTCTGCAATCAATGCTAGAACTAATGGAGATATCATGACCCTAACAGCAGGAGCAGCTACAGCTTTAAGAGGAGCTGCAACCTTAAGGTCAAGGCTTGAAAAAGGGTTGGGAGGCACAAACTTTGGAGTGGGTGAGGATAAAGTTGAAGAAGAAGGGAAAGAATCAAACATGTTGATAGCAATCAACCATGTTTCCAGAGGAGGAGAGCTTCTCAAACGCACAAGGAAAGGGGTTCTCCACTGGAAGCAAGTTTCTTTCAACATAAATTCAAACTGGCAGAAATTTGAGGGGAAGCCTGGAAGAGAAACCTCAAAGAGGACTATATCGACTAGTAGTGGACTTGGACTGTTACAAATAGTATCAGAGTCAGACATTGGGCGATGTACAACGAGGAGGCTGAGTCTGGAGTGGACACAAGGCGTAATCTCGGGTGTGAACTGCAACGTTACGGCATGGCCCGGGCGGGAAAGGGAGACGGATAGCGAGCCGAGGGCTTACTTTGGCATTGTAACAACAGATAGAACAATAGAATTTGAATGCAGTGGGAAAGGAGAAAAACAGATGTGGGTTGAGGGGATTCAATATATGATCAACTTTCGTGCCCACTTGAAATGA 1551 45.65 MRLACCLRSSLKEQVVMVISLNSDSEMSSCLARCSSTRLENIDENSPANWLPGSFVLPETPIESMEFLGRSWSLSAKELSKALSTAHDTPSRLQNSVIGFLSADAHDSNSSVLSEPVRYLFLLSYIGEGNKAFLKRRWVWAVTNGSKAKHRVVCQRERWPPLELLRRLPSGDSPPASPRGSEEMKELLLLHQALNPDFLSNQQLLGNGLYKSILRGNKTLGRWMKDQKERKKQEIRSQNAQLHAAVSVAGVAASVAAFIASLLSCETSSGNHKWPSKTSSAMASAAALVASHCIEMAEEMGASHEHILNVVNSAINARTNGDIMTLTAGAATALRGAATLRSRLEKGLGGTNFGVGEDKVEEEGKESNMLIAINHVSRGGELLKRTRKGVLHWKQVSFNINSNWQKFEGKPGRETSKRTISTSSGLGLLQIVSESDIGRCTTRRLSLEWTQGVISGVNCNVTAWPGRERETDSEPRAYFGIVTTDRTIEFECSGKGEKQMWVEGIQYMINFRAHLK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3189085 3192707 - Carg03044-RA Car09g00562 154299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00562 516 Pfam Auxin canalisation 58 348 IPR008546 -
Car09g00562 516 Pfam Plant pleckstrin homology-like region 450 510 IPR013666 -
Car09g00562 516 Pfam Plant pleckstrin homology-like region 381 405 IPR013666 -
Car09g00562 516 Coils Coil 225 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00562 - - - csv:101221437 607.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01534 Car-Chr2:9894793 Car09g00562 Car-Chr9:3189085 1.85E-39 dispersed
Car06g01189 Car-Chr6:8717984 Car09g00562 Car-Chr9:3189085 1.04E-39 dispersed
Car08g01008 Car-Chr8:6921000 Car09g00562 Car-Chr9:3189085 1.40E-42 dispersed
Car09g00562 Car-Chr9:3189085 Car17g00189 Car-Chr17:1142559 8.79E-46 dispersed
Car04g01203 Car-Chr4:6920943 Car09g00562 Car-Chr9:3189085 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g305 . Blo12g00757 . . . . Bma04g00405 . . . Cma01g01434 . Car09g00562 . . . . . . . . . . . . . . . . . . . . . Cone20ag0601 Lsi04g02333 Csa03g04553 Chy04g00148 . . . . . . Bpe04g00396 . . Sed01g3987 Cmo01g01483 Cmo09g00617 Cma09g00636 . . . . Cpe02g00513 Bhi09g02582 Tan01g3937 Cmetu09g1599 . Hepe01g2223 Mch11g0774 . . . . . . . . . . . Cme04g00174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010810 0 1 1 1 1 0 2 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 0 1 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00562 Car_Chr09 FPKM 9.231112 7.693591 7.390073 7.984623 7.127837 7.571023 6.186962 3.649753 2.836612 3.331282