Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00566 ATGGACGAGGAGCATCATCAGAAGAATGATTCTAGTATCATTTTGAGGACTTCAGTCCCGTTCATTGAGATTGACTCTTTATTTATAGATCTTTCCAGTTGTATTGATAAACTCGATGCTGGAAACTCTGATCATTTCTCCATACGTGGATATGCATCTCAAATGCGTGAAAAAGATTGGAAAAAATGCTGGCCATTTGATTTAGATGGTGACTATGAGCCTACAGAGACAATGTCATTTCTTCCACCTTTTCATGTTCCGCAGTTCAGGTGGCAGCAATGTCGAAATTGCAGGAAGGAGACTCCTGCAGGTTTTGAGAAATCTTTGAATCTAGCTATGCCTGATGCAAAAGACTCGGTGGCTAATGCATCTCCAACCGTGTGCAACCTCAACCATCCTCCATCTTTCATTACTGAGAAAGAAAAGAAAGCTGAAGGCATTCTTTGTTATGAGGTTGGCTCTAGATGGACCTTGAATCCAGAAATTCCCATACCAATCAGTATCGTGCCTGAAGTAGAGTCAAGTCTTATGTTAGAACAAAACAGAAGTGATCCAAGTGATCCAGTAACTCTTAATCCAGATCATAGAGAATCCGTTGAAAACTGCAACCTACTCTGTGGAAATGAAATTGCTGAGGTTGAGCTTGGTATTCGAAATCTCAAAGTGATTGATGAAAATCCTGAAGTCTTTGATGATGAAAAAAAATTGTGTGCACATAAAGAACAAACTGAGATAGCTCTTTCGTCGTCAGGAGAAAAAGCGATTAATCGGGCATGTAATAGTGAGAGGGATCCTGCAAATGGATATCCTGCAGAACTTGATGAGAGTGATGCCACATCATCTGAGCATACTGAAATTTCAGTAGAAAATGATACGAAAGATCATCAAATGCACAAGTCAGGCAGTTTGCACCGTCGAAAGGCTCGTAAGGTGCGCCTGCTGACTGAGTTGCTGAATGAAGATGAAAATATTAAGACCAATCCCATTTCTACAGGAGAGTCCTCATCCCATGGGATTTCAGAAAATTCTGAAGGGTTAAAAGAGCCTTCTGTTTCCCACTGTCCAGTGGCTGCCAAAAAGAATATCAGGTGGTCAGGTCAGAATTTGAAAAGTGTGCCTCTGAATGAAGATTGCCTTGCTGCAGAAACTTCCTCTTCATACAACGTGGATAACAAGATTCAGGCATTGAAGGGAGATGTGGAAACAACAGATTCTTTTCATGTTAATGAATCTGAAAATGCATTAATTGGAACTGCTCTACGAACTAAGAAAAGTTTCTTGAACAAGTGTAGGAATGATGTGAAATCAATTCATGGTAAGAAGAAGAACAAAAAGATCCAACTCGAAGCATGCCCTCTTAATATTCCATCAGGAAGTGGTGGCAACACGTCTGACATTTCTCTTAAACACAACGAGTTTTCTGGCAGTGCAATGGATCCTTTTCTTTTATTTGGTTCAAGAATTGAGCCAATTTCTAGTTTGTCTAAGAGGAACAGCACGATGCCTATAATTGATGACAGGCGGGGTTTTACTTGGAGCAATAGCATGCCAAGAAGAGATTCAGCCTCAAAAGAAGGGGAACTCAGGAACAATGTTCCTACGGTTGTTTCTTGTCCATCAGTGCCTGATGAACCTAGTGGAGGTTTGCATCTTTCTCTCACTAGCAATTTAGCCACTGCAAGAAATGACAAAAAGTCTATTTTCGAGACTGAGGATGGCTTGCATTCATTGTTGTCTTGGCAAGGAAGTACATCCACAGCAAGCGTTGCTAGGAACAAAGATGCCAAAGCCAAGAAACTTAAAGACTCAAATGTTCCTTTTAATTATTCAGATACTTTTTCTGGGCGAGGGCATTGTGGAGTCGATGGTAAAATAACCACCGGCAGAATACATACCCCAAACGGGAAGCAAAAGTCAAAGTCTCAAGTTAATGATGGTAGCTGGTCTCATTTGCAGGCAATGGATAATTCCAGGGTGGACAGACTTGAAAAGAGTATTACAATTCAGCAGCACTTGGCAGCTCAGATGAAACAGAGTGAGAATACGGTCGGTAAGATATCTGAGCAAAGAGCTTTAGATGACATTCCAATGGAAATTGTTGAGCTCATGGCAAAAAATCAGTATGAAAGGTGCCTCGATAATTCTGGAAATAGTAAATCCCTATCAAAGACAAGTTCAAAGAAAGCTCAAATTATGAATTTCAGTAATGCATGTGGCAAAAGTGGCTCGTTGCAGGAGAAAATCAGTCACAACTGGAAATCCCAGGTTAGGAATCTGAGAAATAACTTGCAGACGGCAGGAGATAGTGTGGGATACGGCAAACAAAGTTCAGGTAATTACTTTTCTCACACTGAGGCGGAACATTTGAACATAGACCACCTACGTCAGACTCTTATCCCTCCAGAATATTCTACAATTAGACATTCTGAAAGTAAGTCATCAAATGCTGTCAAATTTTTGGCAAGAAGTAATTGTGAGAATGCATGTTCTCAATATAGCCAATACACTGGGGGTCTGAGAGATCAGGATTCCTCTCATTCCAGGGTGCAATCTTTCAGGGGGAATAACACACGCCATCCTGTTTCACAAAACAATGTAGACGTCGCACATCTATGGACAGAAGCCCTGCCAAATCATCATTCATATGTACCTACCACTCCTAGAAAGGTTGCATCTCAGTTGACCAGTGTAAATGCTAGTAAAAACTGTCCTGAATCAAGTAGAAAAGGGGCTATGAATCGAGAGCATAATCCAAAAAATTTTAATCCAAAAGTTACCAATCTTGAAAAAGATGATGGTATTTATGGTTTGGAAAATTTCAGCAGGACCAGTGCAAAGTACCCATTTCCTTGCCATTCTAATGGCATTGAGCTTCCCCGAAACCAGAGGGGGCCATTGGATTTGTATTCTAATGAAACCATGTCAGCTATGCATTTACTCAGCCTTATGGATGCAGGAATGCAGCGCAGTGAAACGCATGATAACCCAAAATTTCCCAACAAACCTTTTTCCCATGAGCCAAAAGCTAAGGATATTTCTGGGATGGATAATGGTTTGCACAAGTCCTTTGATACCATAAATTATTTGTCTGATTATTACGGTGAAATCCACCCACTAAAGAAGTCCCACGATTGTTTCCATCGTGCTTCAATGGGCGGTGTATCAGTTTCTCCTTCCATAGGAAATGAAAGTTGTGAAATAGTTGCTGATTTAACAGGTAAAGTTGCATTGCAACGTAAACAAAAAGAGATAACCAAGTGCTCCACTTCAACATGGAACAGAGCTCCAAAATCACAGAAGGGTGTACTTACAAGTGGTAATCTAGGCTCCAATGAAGGAGTATTTCCCATTCATAGCTTGCAAAAGAAATCTGGCGGTCCTTCTAGTTCTTTGGTGTCTATGAGTGGATATCATAGAGTGGAAAATCCTGGACAATGTATAATAGAGCGCCATGGTACTAAAAGAATGTTGGAGCATTCGAAAGTTGGTTCTGAGTTTGGAATGTGCAGCATTAATAAAAATCCTGCGGAGTTTAGCATACCAGATGCGGGAAATGTATACATGATAGGGGCTGAAGATCTACAGTTTTCAAAAAGGATATCTAAAAATACGCCTGACTTGAATAACATGGATGGGCGCAAACGCAAGAGGAATATGAAGCATGCTGTTGTAAGATCATCTTCATGA 3687 40.6 MDEEHHQKNDSSIILRTSVPFIEIDSLFIDLSSCIDKLDAGNSDHFSIRGYASQMREKDWKKCWPFDLDGDYEPTETMSFLPPFHVPQFRWQQCRNCRKETPAGFEKSLNLAMPDAKDSVANASPTVCNLNHPPSFITEKEKKAEGILCYEVGSRWTLNPEIPIPISIVPEVESSLMLEQNRSDPSDPVTLNPDHRESVENCNLLCGNEIAEVELGIRNLKVIDENPEVFDDEKKLCAHKEQTEIALSSSGEKAINRACNSERDPANGYPAELDESDATSSEHTEISVENDTKDHQMHKSGSLHRRKARKVRLLTELLNEDENIKTNPISTGESSSHGISENSEGLKEPSVSHCPVAAKKNIRWSGQNLKSVPLNEDCLAAETSSSYNVDNKIQALKGDVETTDSFHVNESENALIGTALRTKKSFLNKCRNDVKSIHGKKKNKKIQLEACPLNIPSGSGGNTSDISLKHNEFSGSAMDPFLLFGSRIEPISSLSKRNSTMPIIDDRRGFTWSNSMPRRDSASKEGELRNNVPTVVSCPSVPDEPSGGLHLSLTSNLATARNDKKSIFETEDGLHSLLSWQGSTSTASVARNKDAKAKKLKDSNVPFNYSDTFSGRGHCGVDGKITTGRIHTPNGKQKSKSQVNDGSWSHLQAMDNSRVDRLEKSITIQQHLAAQMKQSENTVGKISEQRALDDIPMEIVELMAKNQYERCLDNSGNSKSLSKTSSKKAQIMNFSNACGKSGSLQEKISHNWKSQVRNLRNNLQTAGDSVGYGKQSSGNYFSHTEAEHLNIDHLRQTLIPPEYSTIRHSESKSSNAVKFLARSNCENACSQYSQYTGGLRDQDSSHSRVQSFRGNNTRHPVSQNNVDVAHLWTEALPNHHSYVPTTPRKVASQLTSVNASKNCPESSRKGAMNREHNPKNFNPKVTNLEKDDGIYGLENFSRTSAKYPFPCHSNGIELPRNQRGPLDLYSNETMSAMHLLSLMDAGMQRSETHDNPKFPNKPFSHEPKAKDISGMDNGLHKSFDTINYLSDYYGEIHPLKKSHDCFHRASMGGVSVSPSIGNESCEIVADLTGKVALQRKQKEITKCSTSTWNRAPKSQKGVLTSGNLGSNEGVFPIHSLQKKSGGPSSSLVSMSGYHRVENPGQCIIERHGTKRMLEHSKVGSEFGMCSINKNPAEFSIPDAGNVYMIGAEDLQFSKRISKNTPDLNNMDGRKRKRNMKHAVVRSSS 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3204489 3210274 - Carg03049-RA Car09g00566 154303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00566 1228 MobiDBLite consensus disorder prediction 897 927 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 837 862 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 325 347 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 1202 1228 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 260 306 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 989 1016 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 630 646 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 276 298 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 990 1016 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 325 349 - -
Car09g00566 1228 MobiDBLite consensus disorder prediction 624 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00566 - - - csv:101221202 1801.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00243 Car-Chr12:1631311 Car09g00566 Car-Chr9:3204489 4.46E-06 wgd
Car04g01202 Car-Chr4:6909357 Car09g00566 Car-Chr9:3204489 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g314 . . . . Bpe02g01176 . . . . . Cma01g01433 . Car09g00566 . . Cpe07g00222 . Bhi04g00833 . . . Hepe10g0350 . Lcy13g1395 . . . . . . . . . Cone17ag1115 Cone20ag0605 Lsi04g02336 Csa03g04557 Chy04g00145 Cme03g01733 Blo17g00076 . Bda01g00931 Bda13g01337 Bpe14g00510 . . . . Cmo01g01482 Cmo09g00622 Cma09g00640 Cma12g00259 . . . Cpe02g00515 Bhi09g02589 Tan01g3941 . . Hepe01g2227 Mch11g0777 . Cla08g01230 Cam08g1689 Cec08g1268 Cco08g1389 Clacu08g1387 . Cre08g1172 Lsi08g01093 . Chy03g01239 Cme04g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001356 2 9 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00566 Car_Chr09 FPKM 12.554007 15.994984 55.301414 54.468891 18.016478 17.87669 16.621712 44.911011 44.178185 45.327705