Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00576 ATGAGAGGGGTTTTCCAGCGACGGTGCAAATGGTTGAAGAAAACCTCTGTGCATTCATTGCCCACAAACAACACCGAACCAGTCGACTTAAAAGTACCCAAAACAGAGAACCCAACAAGGAAGAGCCGGAGCTCTGTTTCCGACGATGCGCCAACAGCCAGAAACTCGGTGGAACAAGATCAAAAGACACCGAAAAAGCCCACTTTGGATCAACCAAGGCCGTCGATTTCTCAACAAAAGAATCAAAGTCGACGACCTTCCGATGCTGCAAGAAGCTCCACATCGTCCTCCAATGGCTCTGCACAAACCAGAGTGATGAATTCTCAGCAACAATTGACCGAACCCAGAACCCACATCCGAACATCTTTAAGTAATGGCGCGGTTTTGGGTAATTTGAAGCAAGCTGGAGGTGGGAATCTGTCGGCAAACAACAGTCCAAGGCTGAAAGAGATGAACTCAAGTCCAAGACTTGGAGGTAATAACATGGGGAACATAATTCGGAGAAATTCATGTGAATTCCGACAGATTCAAGGCGTGAGAGGTAAATTAGAGCCGGATGTTTTGAAATCCATGGGAAATGAGGCATACAAAAAGGGGAAATATGAAGAAGCATTGGCTTTGTATAACAGAGCAATAGATTTGGATTCAGAGAACGCCGTTTACTACAGCAACAAAGGAGCTGCTCTGATTGGCTTAAACCGTTTGATGGAAGCCATTGAAGAATGCAAAAAAGCATTAAAGATTCAGCCTTCTTATCAAAGAGCCCATCAACGTCTAGCCACTATCTACCTCAGAACTGGAGAGCCTGAGAAAGCACTGGATCACATGGAACAATCCGGCCCTTACAGTGACATAAACGACATGAACAAAGCTCGTGCACTTCAGAGTTGCCTGAGTAGGTGTATTGAAGCAAGAAAGTTACAAGAATGGGACACTCTGTTCAAAGAGACCAATTATGCAATTTCCTCTGTTTCTTATTCAGCTTATAAACTCTATGCCCTGCAAGCTGAGGCATTGTTGAAGCTCCATAGACATTTAGAGGCATATTCTATTTACCAAAAGGGTCAAACCCTGATGGCTAACACTCTAACCAAGTCATTTAGTGTATCTGATAGCGCCCTTATTTTATCCATCGAGGCACAAGTTTACATGACCATGGGCAGGTTTGAGGAAGCAGTGGAAGCAGCTGAAAAATCAACACAGCTTGATCCAACCAACAGGGAAGCAAGTAGAGTGGCAAAATGGGCTAAGTTCATTTCATCAGCTCGATTGAGAGGCAATCTACTTTTCAAGGAATCTAGATTCTCTGAGGCCTGTATTGCATATAGTGAAGGATTAGAAAACGACCCATATAACTCAATTTTGTTATGCAATCGAGCTGCTTGTCGATCGAAGCTCGGTCAGTATGAGAAAGCTGTTGAAGATTGCACTGCAGCTCTCCACGCACAGCCATGTTACAGTAAAGCCAGACTCCGCAGGGCTGATTGCAATGCTAAAGTAAGTAACTTTTGCCTCAAAAGAGCTTCCTTATTTGATGCCATTAAGGTTGTTTGTAAAGATTTGTCCCAATTTTGTGACCAGATGGAACGATGGGAGGCTTCAATTCAAGACTATGAGGTTTTGATAAGAGAAACACCAGGAAATGAGGAAGTGGGGAGGGCTCTGTTCGAGGCACAGCTTCAACTCAGAAAGCAGCATGGGGAGGACGTCAAAGACATGAAATTTGGGTCCAATTTGGTGTCTATATCTAGCTACGAGCGGTTTAGACACTTCGTTACTTCTCCTGGGATGTGTGTGGCTCTGTTCTGCAACAAAGGCAACCAAAAACAGGGGTTGGAAGTGTTGGAGCAGGTTTACAAGAGGTTTCCATCAGTAAACTTTCTCAAGGTGGAGATAGAAGATCATCCTTATTTGGCGAAGTTGGAGAAAGTGAGCGCCATTCCAGCTTTTAAGATATACAGAAATGGAAGAATAGTGAAGGAGATTGCAGCCTCTGGACCCCATTCATTAGAGAGCTTAGTGAAGATGTGCAGCAGTTGA 2040 44.12 MRGVFQRRCKWLKKTSVHSLPTNNTEPVDLKVPKTENPTRKSRSSVSDDAPTARNSVEQDQKTPKKPTLDQPRPSISQQKNQSRRPSDAARSSTSSSNGSAQTRVMNSQQQLTEPRTHIRTSLSNGAVLGNLKQAGGGNLSANNSPRLKEMNSSPRLGGNNMGNIIRRNSCEFRQIQGVRGKLEPDVLKSMGNEAYKKGKYEEALALYNRAIDLDSENAVYYSNKGAALIGLNRLMEAIEECKKALKIQPSYQRAHQRLATIYLRTGEPEKALDHMEQSGPYSDINDMNKARALQSCLSRCIEARKLQEWDTLFKETNYAISSVSYSAYKLYALQAEALLKLHRHLEAYSIYQKGQTLMANTLTKSFSVSDSALILSIEAQVYMTMGRFEEAVEAAEKSTQLDPTNREASRVAKWAKFISSARLRGNLLFKESRFSEACIAYSEGLENDPYNSILLCNRAACRSKLGQYEKAVEDCTAALHAQPCYSKARLRRADCNAKVSNFCLKRASLFDAIKVVCKDLSQFCDQMERWEASIQDYEVLIRETPGNEEVGRALFEAQLQLRKQHGEDVKDMKFGSNLVSISSYERFRHFVTSPGMCVALFCNKGNQKQGLEVLEQVYKRFPSVNFLKVEIEDHPYLAKLEKVSAIPAFKIYRNGRIVKEIAASGPHSLESLVKMCSS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3262512 3265143 + Carg03059-RA Car09g00576 154313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00576 679 Pfam Tetratricopeptide repeat 456 482 IPR019734 GO:0005515
Car09g00576 679 ProSiteProfiles TPR repeat region circular profile. 185 218 - -
Car09g00576 679 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Car09g00576 679 Pfam Thioredoxin 615 675 IPR013766 -
Car09g00576 679 ProSiteProfiles TPR repeat profile. 185 218 IPR019734 GO:0005515
Car09g00576 679 MobiDBLite consensus disorder prediction 16 30 - -
Car09g00576 679 MobiDBLite consensus disorder prediction 44 58 - -
Car09g00576 679 MobiDBLite consensus disorder prediction 16 117 - -
Car09g00576 679 MobiDBLite consensus disorder prediction 136 163 - -
Car09g00576 679 Pfam TPR repeat 192 229 - -
Car09g00576 679 MobiDBLite consensus disorder prediction 130 163 - -
Car09g00576 679 MobiDBLite consensus disorder prediction 68 117 - -
Car09g00576 679 Pfam Tetratricopeptide repeat 375 406 IPR013105 -
Car09g00576 679 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00576 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 998.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00576 Car-Chr9:3262512 Car09g00731 Car-Chr9:4347686 3.55E-123 dispersed
Car04g01190 Car-Chr4:6839525 Car09g00576 Car-Chr9:3262512 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00576 Car_Chr09 FPKM 13.891687 14.276706 30.4284 33.169125 36.249763 33.279213 39.25359 17.462732 16.892927 18.319027