Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00579 GTTTGCCTCATATTTGCGCTCGCTTTCTTCCTCGCTCTTGCTTGCTCTGACTCTCGAATCAAAGAGCTCCCCTTTCTCCTCCCTTTAATATTTCTCTCTCTTTCTCTTTCTATCTCCATTTATGCATTCAAGGATTCAAGGAGTATCCATAAGTTGAGGGTCAAGGTTTATTGGACTCGGATCCTATTCAAAATCCTCGCTGGAGACAATTGTATCAATAGGGACTGTTTACTATTTAGTTTTTATGCATTTTTGTATGACATGGGTTCTCGAGGAAAATTACTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATAGCGATGGTCTTGTCTTCCAGCCTCAGAAGGCTCAACCATCTTCAAATTCCCATGCTTCGGACTTGTTTCCAGCATCAGGAGGTCCCCAAAGAATGTTAAACAACCATGCATTTTCTCATGCATCTTCCGTATCAGGTTTTCAGCCTTTTGTTCGGAGTAATCTTGGTTCTAATCCTGAAATTGGAGAAGAACAAAACAAATTGTCAGATCAAAATTCAAAGACTACATCATCATCTAAGTTAAGTAATGTTCAGACTGCTGCACCTGTGTTGGTTTCAGGTTCTAGAGACACTCAATCAGTGGAAAGGGAAGAAGGAGAATGGTCTGATGCCGAGGGTTCTGCTGATATAAATGGAGTTAGTGTTTTGCATAAACAGTTAAAAGCTTCACAAGAGAAGGGCCTACTTTCTCCTTCCCACGATTTTTCCGAGAACACTACCAAAATTTCTGATACTACCATAGATAAAAGTAGTAATCATGTTCCTTCAACTTCCGATCCAGAGCCAAATGATCGTAAAAGCAACAGTATCCTAAATACAGAAAGCAATGTTAAACTTGATACATCAACGGATAGTGTTCAGGAAGACACTGGGTTGCTTCCGAAACAAAGAGAAGTCAAGGGTATTGAAGCAAGTCATGCTCTAAAATGTGCTAATAACCCGGGAAAGAGGAAAATAGATCAACATCTAGAAGCCAAGCTTGGGAAGAAACGTAATAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGATGGCTGGGCCTATCAAGACTTCAACGCCTCGAAGGCAAACATTTCCACCTCCTGTAACCACTCGCATTGTGAAGGAAGTTCACACTGCAACCCAAGTTAATGAACGTGTTGGGGAAAAGCAGGCTAATAAAGACCAGAAACAAGGTGATGTTTCAAGTCATGAAGGAGGCATTTCCTCAGAATCTGGTGAATCAAAAGTGGACAGTAATGGTGATATGAGTTCTGGGTTACTAGCTCGGCCAAACAGGCCAAACAATGATGGAGATGTCCCAGCAGAGGCGTCCTTACCACCAATTCCTAGACATGGCTCATGGAAGGTACCTACAGATCCAAGGTTGCAGAGGAATATGCAGGTATCCAATAGGAAACCAGCTATGTCTAATCAAAGTTCTTCTGACCACAAGCAGATGAATAAGAAGCATCTTTCTGCCAAGAAGCAGAATTCTGTCAGTACTCATCAAGACTCATCAGTTGAACGACTTATACGGGAGGTGACCAACGAAAAATTTTGGCATCACCCAGAGGAAACTGAACTCCAGTGTGTTCCTGGTCGGTTTGAATCTGTGGAAGAATACATCAAAGTGTTTGAACCTTTGTTATTTGAGGAATGCCGGGCTCAACTTTACAGTACGTGGGAGGAATTATCTGAATCATTCTCACGAGATACACATGTGATGGTTCGTGTCAAGAATATTGAAAGGAGGGAAAGAGGATGGTATGATGTAATAGTTCTTCCTGTGAACGAGTGCAAGTGGTCATTCAAGGAAGGCGATGTGGCAGTTCTTTCATGCCCCAGACCTGGATCAGTTCGATCTAAGAGGAACAGCACTATATCTGAGGAGGATGATGAAGACCCTGAATCTGGTGGACGTGTGGCTGGAACTGTACGAAGACACATTCCCCTTGACACCCGTGATCCTCCAGGGGCTATCCTTCATTTTTATGTTGGGGACTCGTATGATCCTAATAGGATTGAAGAAGATCATATACTTAGAAAATTTCAGACAAAGAATGTTTGGTTTTTAACATTGCTCGGTTCTCTTGCAACAACCCAACGAGAGTATGTCGCCTTGCATGCATTTCGTCGGCTCAATGTGCAGATGCAATCTTCAATCCTTCAGCCTAGTCCTGAGCAATTTCCGAAGTATGAGCAACAGTCACCTGCTATGCCAGAGTGTTTCACACAAAATTTTGTTGAGTATCTGCATAGGACCTTCAATGGACCCCAGCTATCTGCAATCCAATGGGCAGCAACTCATACAGCTGCTGGTACAAGCAGCGGGACAGTCAAGAAGCAAGAGCCATGGCCTTTTACACTCGTACAAGGTCCTCCTGGAACAGGTAAGACCCATACAGTTTGGGGAATGCTAAATGTTATACATCTGGTTCAGTATCAGCATTACTATACTTCTTTGCTCAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGATCATATCACTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAAAATCTTTTCCGCACTCTTCCCACATTGTGTCCTAAACCTAGAATGTTAGTGTGTGCACCTTCAAATGCTGCAACAGATGAGCTTCTTGCTCGTGTTCTTGATCGGGGGTTTATTGATGGGGAGATGAAGGTATATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACTCGTGCTGCTCAAGCAGTTTCAGTCGAGCGTAGAACAGAGCAACTTTTGGTCAAAAGTCGAGATGAAATCTTTAGATGGATGCACCAGCTAAAGGTTCGTGAAAATCAATTATCTCAACAAATCAGTAATCTTCAGAGAGAACTCAATGTTGCTGCAGCTGCCGTTCGTTCTCAAGGATCTGTTGGTGTTGACCCTGATGTTCTGGTAGCTCGTGACCAAAATAGAGATGCATTGTTGCAAAACCTTGCTGCTGTTATAGAAGGTAGGGATAAAATTCTAGTTGAGATGTCACGCCTTGTTATTTTAGAAAGCAGGTTTCGATCTAACAGCAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCAAGCTTTGCCAACGAGGCTGAGATAGTTTTCACTACAGTATCAAGCAGTGGTCGCAAATTATTTTCTAGACTTTCTCATGGTTTTGACATGGTAGTTATTGATGAGGCCGCCCAAGCCAGTGAGGTAGCTGTTCTTCCACCGCTTTCTCTTGGTGCAGCAAGGTGTGTGCTTGTTGGAGATCCCCAGCAGCTCCCAGCCACAGTTATCAGTAAAGCAGCAGGAACACTGTTGTACAGTAGAAGTCTCTTTGAAAGATTCCAGCAAGCAGGATGTCCCACTATGTTGTTATCAGTGCAGTACAGAATGCATCCTCAAATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGACGCCTTACTGACAGTGAAAGTGTTGCTAATTTACCTGATGAGACATACTACAAGGACCCTTTACTTAGACCTTACACTTTCTTTGATATTACGCATGGACGGGAATCTCATAGAGGGGGATCTGTTTCATATCAAAATACTCATGAAGCACAATTTTGTCTTCGTATTTATGAACATCTACAAAAGACCGTGAAGTCTTCAGGCATAGGCAAAGTTTCTGTCGGTATAATAACACCATACAAACTCCAATTGAAGTGCCTCCAACGTGAGTTTGAGGAGGTTCTGGTCTCTGAAGAAGGGAAGGATCTGTATATTAATACTGTCGATGCTTTCCAAGGTCAAGAAAGGGACGTGATCATCATGTCTTGTGTGCGTGCCTCCAACCATGGCGTTGGCTTTGTTGCTGATATTCGTCGAATGAATGTAGCACTGACTCGTGCCAGGAGGGCCCTGTGGGTAATGGGTAATGCTAATGCTTTGATTCAGTCTGAAGATTGGGCTGCGCTGATCAATGATGCGAAGTCAAGGAACTGTTACATGGACATGGAATCTCTCCCCAAGGACTTCCTCGGACAGAAGGGGTCTACTCAATCTACTTTGCCTGGGAAGAACTCTTCCAACATTAGGGGTCTGAGATCAGTTCTTCCAAGACATAGGACTCTGGATATACACGTGGAGTCCAGGTCTGGAACACCATCGGAAGATGATGAGAAATCAAACTCTGCGGTAATCCCTAGGAATGGAAATTACCGGCCTTCTAAAGCGGCGGTAGAGAATTCCCCAGAAGACTTCGATCAGTCAGGTGACAAATTGAGAGATACTTGGCATTATGGTATGCACAAAAGACAAAGTTCTGCTGGGACTATTGGGAAGAGAGATATTTAA 4374 43.26 VCLIFALAFFLALACSDSRIKELPFLLPLIFLSLSLSISIYAFKDSRSIHKLRVKVYWTRILFKILAGDNCINRDCLLFSFYAFLYDMGSRGKLLFDLNEPPVEDNEDSDGLVFQPQKAQPSSNSHASDLFPASGGPQRMLNNHAFSHASSVSGFQPFVRSNLGSNPEIGEEQNKLSDQNSKTTSSSKLSNVQTAAPVLVSGSRDTQSVEREEGEWSDAEGSADINGVSVLHKQLKASQEKGLLSPSHDFSENTTKISDTTIDKSSNHVPSTSDPEPNDRKSNSILNTESNVKLDTSTDSVQEDTGLLPKQREVKGIEASHALKCANNPGKRKIDQHLEAKLGKKRNRQTMFLNLEDVKMAGPIKTSTPRRQTFPPPVTTRIVKEVHTATQVNERVGEKQANKDQKQGDVSSHEGGISSESGESKVDSNGDMSSGLLARPNRPNNDGDVPAEASLPPIPRHGSWKVPTDPRLQRNMQVSNRKPAMSNQSSSDHKQMNKKHLSAKKQNSVSTHQDSSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIKVFEPLLFEECRAQLYSTWEELSESFSRDTHVMVRVKNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSCPRPGSVRSKRNSTISEEDDEDPESGGRVAGTVRRHIPLDTRDPPGAILHFYVGDSYDPNRIEEDHILRKFQTKNVWFLTLLGSLATTQREYVALHAFRRLNVQMQSSILQPSPEQFPKYEQQSPAMPECFTQNFVEYLHRTFNGPQLSAIQWAATHTAAGTSSGTVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDHITTGSIDEVLQNMDQNLFRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEIFRWMHQLKVRENQLSQQISNLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLVILESRFRSNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDETYYKDPLLRPYTFFDITHGRESHRGGSVSYQNTHEAQFCLRIYEHLQKTVKSSGIGKVSVGIITPYKLQLKCLQREFEEVLVSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALINDAKSRNCYMDMESLPKDFLGQKGSTQSTLPGKNSSNIRGLRSVLPRHRTLDIHVESRSGTPSEDDEKSNSAVIPRNGNYRPSKAAVENSPEDFDQSGDKLRDTWHYGMHKRQSSAGTIGKRDI 1457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3275167 3283999 - Carg03062-RA Car09g00579 154316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00579 1457 MobiDBLite consensus disorder prediction 411 440 - -
Car09g00579 1457 Pfam AAA domain 770 1117 IPR041677 GO:0004386
Car09g00579 1457 MobiDBLite consensus disorder prediction 1387 1457 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 161 205 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 239 307 - -
Car09g00579 1457 Coils Coil 950 977 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 1353 1372 - -
Car09g00579 1457 Pfam AAA domain 1124 1320 IPR041679 -
Car09g00579 1457 MobiDBLite consensus disorder prediction 470 492 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 1387 1404 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 625 651 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 106 134 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 113 131 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 389 517 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 240 305 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 1426 1442 - -
Car09g00579 1457 MobiDBLite consensus disorder prediction 161 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00579 - - K10706 cmos:111446131 2620.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00579 Car-Chr9:3275167 Car16g01029 Car-Chr16:8821283 5.94E-43 dispersed
Car04g01893 Car-Chr4:11028140 Car09g00579 Car-Chr9:3275167 9.78E-48 transposed
Car14g00927 Car-Chr14:5588822 Car09g00579 Car-Chr9:3275167 6.76E-75 transposed
Car17g00586 Car-Chr17:5596943 Car09g00579 Car-Chr9:3275167 1.49E-97 transposed
Car04g01187 Car-Chr4:6817726 Car09g00579 Car-Chr9:3275167 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00579 Car_Chr09 FPKM 43.076504 43.837139 84.404594 82.874344 66.582466 62.674778 60.763325 2.996441 3.862933 3.953234