Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00601 ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGCCTCAGATTCCTTCAAGAACAACAGCAACTGAACCCGCAAAACCAGGATCAATCGCTCCATTCCTCTTCCCTTCCAGCGAAGAAGCGAAAGGAGTCTCGCGATTCATCATTATTCTTTCTTCCAGACGCTACTACGCCTCACCCAGCCGCCATTTCCGCTTCTTACTGCTTGCCAACCAAGAAGAGAGTGTGGGCGCTTCACCCTGATTTTCCCCCCGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTTCAGAGGAAGAAGAATCGGTACCGAGAACAGAATCAGTGAGAGAGAGAAATGAAGAGGATGAAGAAAAGGAAATTTCTGATGTTGAAGACGAAGACGATGGGATCCTCTGTGCGATTTGTCAAAGCACAGACGGAGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGCGATTTAATGGTACATTCTTCATGTTATGGCAATCCTCTGGCGAAGAGCGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCTAACACAGAGAAGAAGGTATCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTCAAAGGAGGGGCCATGAAGCCGACGAACGATGGCCGATGGGCGCATATTGTTTGTGGGCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCAGATGGAAGAGAAGGAATCGATTGCTCATTGATTCTGAAGAGGAGATGGGAATCCAAATGTTACATCTGCAAAACTTCTAGCGGTTGTGCTATAGACTGCTCAGAGCCCAAATGCAATTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACCAAGAAAGAAGAAGATCTGGTGCCATTGTAGCTGGGTTCTGCAGAAACCACACCGACTTGTGGAAGAAGGTAAATTCATTCCCTTTCTCCTTTTATCCAGGAAGGAAATCTATAGCTCGAGATGAAGAAACTCGAAAATCAAAATCAAAATCAATCGGACAATCAAAAGTGATGGCGGAGAAGAACAACACATCAAGATTCGGAGGTTCGATTTTGGTACCTTCCGTTCAAGAGTTGGCGAAACAGCCGATCATCGAAGTTCCATCTCGATACATCCGCCCCGATCTCCACTCCTTCCCGATCGTCTCCGCCGCTTCCGAAATCCCCGTTATCGATATGTCGAAGTTTCACTCCGACGCTTCAATGCACTCCGAATTGGCTCGGCTTCATTCCGCTTGCAAAAATTGGGGATTCTTTCAGTTGGTGAACCATGGAGTGAGCGATTCGTTGATCGAGAAAATGAAGGCGGAGACGCAGAAGTTCTTCAATCTACCGATTGAAGAGAAGAAGAAAAGGCTATGGCAGAGTGAAGAAGACGCAGAAGGATTTGGACAAGCTTTCGTTGTAAGTGAAGAACAGAAACTGGATTGGTGCGACCTTTTCTTCATCGCTACCGCGCCTCCACATCTCAGGAAACCGCGCTTATTTCAAAACCTCCCTCTCGCTTTCCGAAACACAATGGAGGAGTACTCGGCAGAGGTGAAGAATCTGGCGATGGCGATTTTCGAGCAATTTGAGAAAGCGTTGGGGATCAAAGAAGGGGAGTTGACGGAGATCTTCAAGGATGGTAGTCAGTCGATGAGAACGAACTATTATCCTCCCTGCCCGGAGCCGGAGAAGGTGATCGGACTGACGCCGCATTCCGACGCCGTCGGCCTCACAATTCTGCTACAAATCAACGAAATGGAAGGCCTGAAGATCAAGAAGGACGGGAATTGGGTTGCCGTGACGCCTCTCCCCAATGCGTTCATCGTCAACATTGGTGACATCATGGAGATAATAACAAATGGGGAATACAAAAGCATAGAACACTGCGCCACGGTGAACGCAAAGAGGGAAAGGCTGTCCATAGCGACCTTCAACAACCCAAGTTTGGAGAAAGAAATAAAGGCAATTCCATCCCTCATCACGCCTCACTCCCCTCCATTGTTTACAACTTTGACATACCAACAGTTCGTGAGGCTGCTCTTTTCTCGCAAACTAGACGGGAAGTCTCACCTCGACACCCTGCGCATTCACACTCCACCAACCTAA 2124 47.74 MDSLHGLPPLKSLRFLQEQQQLNPQNQDQSLHSSSLPAKKRKESRDSSLFFLPDATTPHPAAISASYCLPTKKRVWALHPDFPPESLDLNVEYKPPSEEEESVPRTESVRERNEEDEEKEISDVEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHSSCYGNPLAKSVPEGDWFCIQCLASSSSNTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSLILKRRWESKCYICKTSSGCAIDCSEPKCNLAFHVTCGLKEDLCIEYQERRRSGAIVAGFCRNHTDLWKKVNSFPFSFYPGRKSIARDEETRKSKSKSIGQSKVMAEKNNTSRFGGSILVPSVQELAKQPIIEVPSRYIRPDLHSFPIVSAASEIPVIDMSKFHSDASMHSELARLHSACKNWGFFQLVNHGVSDSLIEKMKAETQKFFNLPIEEKKKRLWQSEEDAEGFGQAFVVSEEQKLDWCDLFFIATAPPHLRKPRLFQNLPLAFRNTMEEYSAEVKNLAMAIFEQFEKALGIKEGELTEIFKDGSQSMRTNYYPPCPEPEKVIGLTPHSDAVGLTILLQINEMEGLKIKKDGNWVAVTPLPNAFIVNIGDIMEIITNGEYKSIEHCATVNAKRERLSIATFNNPSLEKEIKAIPSLITPHSPPLFTTLTYQQFVRLLFSRKLDGKSHLDTLRIHTPPT 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3418600 3423964 + Carg03084-RA Car09g00601 154338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00601 707 Pfam 2OG-Fe(II) oxygenase superfamily 555 652 IPR044861 -
Car09g00601 707 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 553 653 IPR005123 -
Car09g00601 707 Pfam PHD-finger 133 181 IPR019787 -
Car09g00601 707 MobiDBLite consensus disorder prediction 19 59 - -
Car09g00601 707 MobiDBLite consensus disorder prediction 19 34 - -
Car09g00601 707 Pfam PHD-zinc-finger like domain 198 296 - -
Car09g00601 707 MobiDBLite consensus disorder prediction 92 117 - -
Car09g00601 707 ProSiteProfiles Extended PHD (ePHD) domain profile. 196 308 IPR034732 -
Car09g00601 707 ProSiteProfiles Zinc finger PHD-type profile. 130 183 IPR019787 -
Car09g00601 707 MobiDBLite consensus disorder prediction 87 125 - -
Car09g00601 707 Pfam non-haem dioxygenase in morphine synthesis N-terminal 398 498 IPR026992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01220 Car-Chr3:9498518 Car09g00601 Car-Chr9:3418600 1.41E-94 dispersed
Car04g00145 Car-Chr4:796035 Car09g00601 Car-Chr9:3418600 1.88E-74 dispersed
Car06g01279 Car-Chr6:9189324 Car09g00601 Car-Chr9:3418600 2.91E-84 dispersed
Car07g00125 Car-Chr7:781954 Car09g00601 Car-Chr9:3418600 4.57E-13 dispersed
Car09g00601 Car-Chr9:3418600 Car14g01456 Car-Chr14:12151609 6.12E-82 dispersed
Car18g00441 Car-Chr18:2819772 Car09g00601 Car-Chr9:3418600 2.88E-36 dispersed
Car01g01090 Car-Chr1:10216488 Car09g00601 Car-Chr9:3418600 3.84E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4075 PF14226 DIOX_N 3.90E-28 CL0029 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00601 - - csv:101203495 557.37