Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00604 ATGTCACAGCTGATGAAGATCGGCTCCATTCTTGAAGGTTCCTATTTGTCGGGAAAAGAAACGTCGTTTGTTCTCTCGAAGAGCGATTCAACCACCAAGAGCTTGGATCTTGGGGTTGTAAATTTCACCTCTAATAAAATGGATAGAGGCCAGGCTATAGCACTCTATGCCACGATAAGTTGTGTCGCTTTCATCGTGTCGAAGATCTTCATAGCATTGCTTCTTTACAAGCGCTGGAAAAGAAGACACATGATTTATGAAGATGGGATGTCAGGTGGGAAGATGGTCATGTTCAAGTCTCCAGCAACGAAGTCCCTGGAATCAGATGCGTTCCTGAAGAAAACACTAAAACTAAACAACAGGGACATCATTGGCTCTGGAGGCCATGGGACTGTTTACAGACTTGCACTAAGTGACTCCTTGACATTTGCTGTGAAAAGACTGAACAGAGGAAGTGCTGAAAGAGATCAAGGATTCGAGAGAGAATTGGAAGCGATGGGAGACATAAAGCATCGGAATATCGTCACGCTTCACGGATACTACACTGCTCCTCACTATAATCTCCTTATATATGAGCTAATGCCTAATGGAAGTTTGTATGAATATCTACATGGAAGATCAAAGGAGAAGGTTTTGGATTGGCCATCACGGTATAAAATAGCAGTAGGTGCAGCGAGAGGCATATCGTACCTTCATCACGACTGCATCCCGCACATCATACATAGAGATATCAAGTCGAGCAACATATTGTTGGATCAAAACATGGATGCTCAAGTGTCCGACTTTGGATTGGCAACTCTGATGGAACCCAACAAGACTCATGTATCGACTATTGTGGCAGGCACATTTGGGTACTTGGCTCCAGAATACTTCGATACGGGGCGAGCAACGACAAAGGGAGATGTCTACAGCTTTGGTGTAGTACTACTTGAGCTCTTAACAGGGAAAAAACCGACTGATGAAGCATTTATGGAAGAGGGAACTAAACTTGTGACATGGGTGAAAACAGTTGTTCAGGAGAAAAGGGAAGAATATGTACTTGACAGAAGTTTGAGCTGTTTTCCGGTTGACGAGGTTAATGTCGTATTTAGCATAGCATTGAAGTGTCTTGAACCAGAACCTGCTCGGCGACCGACAATGGCAGAGGTCGTCAAAGTGCTTGAGCAGCTAAAGTCAAGTAGCATTGTAACAGATTCTTGA 1200 43.83 MSQLMKIGSILEGSYLSGKETSFVLSKSDSTTKSLDLGVVNFTSNKMDRGQAIALYATISCVAFIVSKIFIALLLYKRWKRRHMIYEDGMSGGKMVMFKSPATKSLESDAFLKKTLKLNNRDIIGSGGHGTVYRLALSDSLTFAVKRLNRGSAERDQGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLYEYLHGRSKEKVLDWPSRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMDAQVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATTKGDVYSFGVVLLELLTGKKPTDEAFMEEGTKLVTWVKTVVQEKREEYVLDRSLSCFPVDEVNVVFSIALKCLEPEPARRPTMAEVVKVLEQLKSSSIVTDS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3429789 3432688 + Carg03087-RA Car09g00604 154341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00604 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Car09g00604 399 Pfam Protein kinase domain 121 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00604 399 ProSiteProfiles Protein kinase domain profile. 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00604 399 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00604 - - - cmax:111477061 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00604 Car-Chr9:3429789 Car11g00135 Car-Chr11:764403 1.55E-94 dispersed
Car09g00604 Car-Chr9:3429789 Car09g00658 Car-Chr9:3862978 2.76E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g10 . . . . . . . . . . . . . Car09g00604 . . . Bhi09g03584 . . . . Mch11g0971 . Cla11g01673 . . . . . . . . . . Lsi04g01967 Csa04g02246 . . . . . . . . . . . . Cmo09g00666 . . . . Cpe14g00338 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89092 PF00069 Pkinase 1.30E-47 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00604 Car_Chr09 FPKM 9.166167 11.150649 15.55354 15.778159 14.509795 12.874271 14.432206 12.306417 12.07362 11.878973