Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00649 ATGTGGTTCATTGGCATAAATTTTTTCATGCTATTCTGTCATCTATGTCGTGTGACTAATTCATTGGATTTCATTGAATGTGACGTCTCCTTGCTCTGTCATTTTGATGATCTGATCAAAACTAAATTGTACATTTTAAAAGAGATGCAGATTGAGAAAAGATTAGACAAGCTCAAGAAAGGCAAGGCAAGGGATTCACAGTCTAAAGTCAAGGAAGAAGCCGAGAAATCTGCATTGGAAAAAATCCAGACGGTCCTTATGGATGGGAAACCAGCCCGATCAGTAACTTTAACAGATTTTGAAAAGGATGCTATAAAGCATCTTTGCCTGCTCACAATGAAACCGGTCATATATGTGGCCAATGTAGCAGAATCTGATCTAGCGGAGCCTGCAAGTAATCCTCATGTTGAAGAAGTTATGAGTCTTGCTTCAGAGTTGCAGTCTGGAATAGTGACAGTTTCTGCACAGGTTGAGTCTGAGCTTTCTGAACTTCCATCAGAAGAGAGGGTTGAGTATTTAAAATCTCTTGGTGTAAGTGAAAGTGGCCTGGGAAATCTTATTAGGGCAACCTATAACCTTTTGGGACTCCGAACATATTTTACTTCGGGTGAAAAGGAAACAAAAGCCTGGACCATACTTTCAGGAATGACTGCACCACAAGCTGCTGGAGTCATTCACTCAGACTTTGAGAGAGGGTTCATTCGCGCAGAGACGGTGGCTTATGACGATTTTGTTGCTGCGGGTTCATTTTCTGCAGCAAGGTAA 765 41.44 MWFIGINFFMLFCHLCRVTNSLDFIECDVSLLCHFDDLIKTKLYILKEMQIEKRLDKLKKGKARDSQSKVKEEAEKSALEKIQTVLMDGKPARSVTLTDFEKDAIKHLCLLTMKPVIYVANVAESDLAEPASNPHVEEVMSLASELQSGIVTVSAQVESELSELPSEERVEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILSGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFSAAR 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3795794 3804501 - Carg20055-RA Car09g00649 154386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00649 254 Pfam Protein of unknown function (DUF933) 196 253 IPR013029 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00649 K19788 OLA1; obg-like ATPase 1 - csv:101217443 371.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01111 Car09g00649 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00649 Car-Chr9:3795794 Car13g00377 Car-Chr13:6331056 7.13E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00649 Car_Chr09 FPKM 9.093081 12.057087 8.738309 13.978599 49.68029 40.432468 50.948246 0.986994 0.422208 0.401