Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00677 ATGCAGCTATATCATCATCCGTTCTCTTTGAACAGCCAGAAGGTGAGACTCGCCTTGGAAGAGCAAGGCATCGATTACACGTCGTTTCATGTCAATCCTATCACGGCGAAGAACATGGACGCCTCGTTCTTCAAGATGAACTCAAATGCAAAACTTCCCGTCTTTCAAAACGGTTCCCATGTCATTTTCGACACCATCGAGATAATTCAATATATAGAAAGAATTGCCATTGTCTCCTCGGGGATCGATGACGTAATGCCGAGTAGTCGAGAAGTTGTTGAATGGATGCATAAGATACAAGAATGGAATCCAAAATTTTTCACTCTTGCCCACATTCCCGAGAAGTACCGTCTCGCTGTTACCAAATTTAGAAGGCGGGTAGTGATCGCTCGGATGGCCGAAACTCCCGAAATGGCTGCTACTTACCATCATAAGCTCCGAGAAGCATACGAGACCGAAGACAAACTGAAAAACAAAACCGTTATCAAACAAAGCACGGAACATCTAGTTGCACTTCTTGATGAAATCGAGTCAAAACTAGGCCAAACGTCTTTCTTGGTAGGGGAAGAGTTTACCATGGCCGACGCCGTGTTCATACCCGTGCTGGCTCGGCTCGTTCTGTTGAAGCTGGCCGACGAGTACATCGGTAGCAGACCGAACATTGCAGAGTATTGGATGTTGGTGCAGCAGAGACCAAGCTACAAGAAGGTGATTGGGAAGTACTTCAATGGATGGAGAAAGCATAAAACACTTCTGAAAACTTGGTGTTTTGTTCATATCAGAACCTTGCTGAGGAGATATTGA 804 45.27 MQLYHHPFSLNSQKVRLALEEQGIDYTSFHVNPITAKNMDASFFKMNSNAKLPVFQNGSHVIFDTIEIIQYIERIAIVSSGIDDVMPSSREVVEWMHKIQEWNPKFFTLAHIPEKYRLAVTKFRRRVVIARMAETPEMAATYHHKLREAYETEDKLKNKTVIKQSTEHLVALLDEIESKLGQTSFLVGEEFTMADAVFIPVLARLVLLKLADEYIGSRPNIAEYWMLVQQRPSYKKVIGKYFNGWRKHKTLLKTWCFVHIRTLLRRY 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3975577 3976560 + Carg20084-RA Car09g00677 154414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00677 267 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Car09g00677 267 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 118 251 IPR010987 -
Car09g00677 267 Pfam Glutathione S-transferase, C-terminal domain 161 210 - -
Car09g00677 267 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00677 K22077 GDAP1; ganglioside-induced differentiation-associated protein 1 - csv:101222476 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00677 Car-Chr9:3975577 Car12g00363 Car-Chr12:2329870 1.71E-11 dispersed
Car04g01134 Car-Chr4:6545582 Car09g00677 Car-Chr9:3975577 1.29E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g210 Blo01g01309 . Bda01g00677 . Bpe02g00628 . . Bma01g02091 . . Cma01g01364 Cma09g00767 . . . Cpe06g00604 . . . . . . . . . . . . . . . Cone4ag1434 Cone7ag1501 . . . Csa04g01774 . . . . . . . . . . . Cmo01g01417 Cmo09g00759 . . . Car09g00677 . Cpe02g00572 Bhi09g02716 . . . . . . Cla11g01560 Cam11g1625 Cec11g1651 . Clacu11g1781 Cmu11g1597 . . . Chy07g00602 Cme07g00806
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g01048 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 3.3e-65 245.4
Car08g00362 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.2e-64 242.7
Car08g00363 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 8.8e-58 220.7
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 1.0e-66 250.4
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 7.5e-65 244.2
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 6.8e-58 221.1
Car08g00362 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 7.9e-61 231.1
Car17g01048 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.3e-58 223.8
Car08g00363 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 1.7e-55 213.4
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.5e-65 245.7
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 4.3e-65 245.0
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.5e-57 219.9
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 1.8e-66 249.6
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 6.7e-66 247.7
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 6.0e-59 224.6
Car08g00362 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.6e-69 260.0
Car17g01048 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 5.4e-65 245.0
Car08g00363 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 2.6e-59 226.1
Car14g01764 CST 47 202 Glutathione S-transferase Gene Family AT1G17180 51.6 1.1e-39 160.6
Car02g00463 . 50 220 Glutathione S-transferase Gene Family AT2G02390 67.3 3.1e-62 235.3
Car02g00464 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 7.7e-61 230.7
Car06g00974 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.6e-48 189.1
Car02g00464 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.1 1.6e-73 273.1
Car02g00463 . 9 218 Glutathione S-transferase Gene Family AT2G02380 62.4 7.8e-73 270.8
Car06g00974 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.6e-62 236.5
Car04g00676 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 2.9e-89 325.5
Car16g00531 . 1 256 Glutathione S-transferase Gene Family AT5G41210 63.7 8.6e-89 323.9
Car16g00531 . 1 256 Glutathione S-transferase Gene Family AT5G41240 62.5 9.6e-86 315.1
Car04g00676 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 6.2e-85 312.4
Car06g00291 . 4 232 Glutathione S-transferase Gene Family AT5G02780 67.5 2.3e-83 305.8
Car06g00290 . 10 249 Glutathione S-transferase Gene Family AT5G02780 57.3 2.8e-68 255.8
Car06g00291 . 3 230 Glutathione S-transferase Gene Family AT3G55040 56.8 2.9e-75 279.3
Car06g00290 . 5 249 Glutathione S-transferase Gene Family AT3G55040 51.0 1.5e-60 230.3
Car06g00291 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 3.0e-91 332.0
Car06g00290 . 10 251 Glutathione S-transferase Gene Family AT5G02790 55.8 2.5e-69 259.2
Car04g00219 . 284 492 Glutathione S-transferase Gene Family AT1G19570 68.1 8.2e-80 293.9
Car04g01111 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.6e-78 289.7
Car14g00753 . 67 275 Glutathione S-transferase Gene Family AT1G19570 61.4 6.8e-74 274.2
Car04g00219 . 284 493 Glutathione S-transferase Gene Family AT1G75270 72.0 2.4e-87 318.9
Car04g01111 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.6e-86 316.2
Car14g00753 . 67 275 Glutathione S-transferase Gene Family AT1G75270 63.3 2.1e-75 279.3
Car04g00218 . 1 165 Glutathione S-transferase Gene Family AT1G75270 50.7 3.3e-52 202.2
Car14g00753 . 56 277 Glutathione S-transferase Gene Family AT5G16710 76.6 3.0e-100 362.1
Car04g00219 . 284 491 Glutathione S-transferase Gene Family AT5G16710 59.1 7.7e-72 267.7
Car04g01111 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.1e-70 263.8
Car09g00677 . 1 267 Glutathione S-transferase Gene Family AT1G77290 68.5 1.7e-106 382.9
Car04g01134 . 1 324 Glutathione S-transferase Gene Family AT1G77290 56.8 2.6e-99 359.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005962 2 5 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00677 Car_Chr09 FPKM 5.409513 6.720951 28.846149 30.149025 274.730652 294.923035 277.482483 29.91493 29.841087 31.089933