Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00678 ATGGGAAGAGGAAAGATTGAAATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTATTCAAAGAGAAGAAATGGTATCATCAAGAAGGCCAAAGAGATCACTGTTCTTTGTGATGCTCAAGTATCTCTTGTGGTGTTTGCTAGCTCTGGCAAAATGCATGAGTATTGTAGCCCTTCTACACCGTTGATTGATATCTTGGATAAGTATCATAAGCAATCGGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATTTAAGCAATGAAATGGATAGAGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCGTTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTAATGGCTCTTGAAGAAGCCCTTGAAAATGGCCTTACTGGTGTTCGTGAGAAGCAGTCGGAGCTCATGAAGATGATGAGGACAAATGAAAGAATGATGGAAGAAGAAAACAAGCGCCTCAATTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGGATGAGAGATTTCAATTCTCAAATGCCCTTTGCGTTCAGAGTGCAGCCCATTCAGCCAAACCTACAAGAAAGGAACAATTAA 639 40.53 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3977159 3980243 - Carg20085-RA Car09g00678 154415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00678 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car09g00678 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car09g00678 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Car09g00678 212 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Car09g00678 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Car09g00678 212 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 210 - -
Car09g00678 212 Coils Coil 135 155 - -
Car09g00678 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Car09g00678 212 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car09g00678 212 Coils Coil 77 111 - -
Car09g00678 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car09g00678 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car09g00678 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car09g00678 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car09g00678 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car09g00678 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01517 Car-Chr1:12820497 Car09g00678 Car-Chr9:3977159 9.54E-45 dispersed
Car07g00021 Car-Chr7:143134 Car09g00678 Car-Chr9:3977159 3.69E-36 dispersed
Car09g00110 Car-Chr9:542594 Car09g00678 Car-Chr9:3977159 3.52E-42 dispersed
Car09g00678 Car-Chr9:3977159 Car03g01215 Car-Chr3:9481463 6.56E-36 dispersed
Car04g01135 Car-Chr4:6549010 Car09g00678 Car-Chr9:3977159 9.45E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4080 PF01486 K-box 7.70E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00678 K09264 - csv:101222239 402.519