Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00680 ATGTTGAAGCCGAAGCCGTTCGCCGGAGTCAATGTGTTCGTGTCCCGCAATCTTGTCGCTCCGGAGATATTCGACGCTCTTCACGACGCTTTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGTGATCCTGCTCGAAACGGCCCTAAAGATTATCATGTTATCTCCTCAGCCGATCACGAAAAGTTTGAGGATCTTCGTGCGAAGGGATGCAATTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGAACAGACCCCTTCCTCAGCAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAAATTCTTGCATCTGGTTTTCAGGCAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCAGACGAGAGCATCTGCAGATGTCAGCTTTGTCATCGCGAAGAATGCTTTGGCTGCAAAATACAAGTGGGCACTTAACATTTCAAAGAAACCTATTGTCACAATTGCTTGGTTACAGCAGTGCTGGATTGAACATCGTGTAGTGCCACAGGATGGATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCCGCAGATGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTTACAAGAAAGTGTACACATTTGATATGTACTCCTGAAGGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGTTAGAAGAGCATGTCTTAATGAGGAGTTGTACCCTGTTGGTAGCGTTTCTGCAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTTCTCACAATAGCCAAGAAAAGGTTAATGGGAACGTGCAAGCTGCACCGTCCTCATTTATTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACGTCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTTACAATGGCAAAGAATGAAGAAAACACTGAAAATTGCATTGCAAATGACTTCCAATCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCCGGTACATGCTGTTCAATGACAAGTTAACACACATAATTGTTGGAAATCCGTCAGAAATGGAGAAAAAAGAGGTTAGAGACATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCCGTTCTTGGCAGACACATGGCCTATGATGAACTTATCCCTAAAGCATCCTGTCAAACAAGCACCATTGTTATGGATCGGAATAAAGTTCCTAATGTTCATCCAATCATGCCATTGAATGGGTTAGAAGGAAATATTCATGCTAAAATTGGAAAGACATCAATGATAGAGGAAAGAATTCAAGAAAAAAGTGAAGCAAATGTGGGTGGAGACAAGACCACAAAATTGTCTCAGAAAAGCCAACATTCTGTACCAAATGTTATGAACAAGAGTCAAGAAAAGTTGCGGCGTGATGTCATGGTTCCAAATGGGAAGTCATCATGTGTGTATAAGGGGAAAATATTTTTCTTTTCTAGTTCCTTTCCGGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAAGTGGTTGAGGATCATACGAAACAGAAAGTGCACTTCACAGTTGGATGTCATGGTGTGATACCAAGGAGTACAGATATTCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGTTTGTCGGATACCAATGAGCACATTCTCTATTCTCCACTTCCTTGTTGTGTTCCTTTGCCTGGGTTTGAAAGAATACGGTTCTGTGTTTCACAATATGAAGACAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTCGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATCTATGAGTGTGTTAGACAGAGTAAGCTTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGATAGAGAGGCAGGCTTATGTACTGTCAGTCAGTTTCCTACACAAGCTGGCCAAATGATAGCCGGTGAAGGTGAATCCCAGTTCCCTACCCATTCTGCTATCTTGAGAGATCAATCAGCTGGAACTAACAGTAGCTCTATGGGAGAAGTTGAACAAATAAGTTTTACTAATAAAAAGCGGAAATTCCTTGACGAACCTATACAAAAACGTCCTATATTTGTTGGAAACAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGCAGTAACTTCACACGTTCCTGATGTTGCTGCCGCGATTGAGGACTTGTTGGAGCAGACGAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTATTTTCCCGCCCGACTGTTCCGTCATTGGTCAAGACCATTCAGAAGCTCCTCCAGTTGGTGGTTCATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAAGAAGACGTCAGCGATCCTACTACTGGAGATGGGTGTGCAGGGGCATATGATGGTTTTAGTGAAACGCAAACCGAATCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAAGGCAAATGCTCATAGACAGAGTACGAACCCGGAGTAGCATGATTTGA 2910 42.41 MLKPKPFAGVNVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADHEKFEDLRAKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWALNISKKPIVTIAWLQQCWIEHRVVPQDGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLICTPEGDKYKVARTWGHINIVTRKWFDQSIVRRACLNEELYPVGSVSATSNKMARGCLTSHNSQEKVNGNVQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVDVEVPVTMAKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKASCQTSTIVMDRNKVPNVHPIMPLNGLEGNIHAKIGKTSMIEERIQEKSEANVGGDKTTKLSQKSQHSVPNVMNKSQEKLRRDVMVPNGKSSCVYKGKIFFFSSSFPEDRRAEIVEWINQGGGEVVEDHTKQKVHFTVGCHGVIPRSTDIHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGFERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSVTAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTHSAILRDQSAGTNSSSMGEVEQISFTNKKRKFLDEPIQKRPIFVGNSLTHFDCNLNSTRETTSKSSAVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTTGDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMI 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3988909 3997292 + Carg20087-RA Car09g00680 154417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00680 969 MobiDBLite consensus disorder prediction 521 546 - -
Car09g00680 969 MobiDBLite consensus disorder prediction 527 546 - -
Car09g00680 969 ProSiteProfiles BRCT domain profile. 662 745 IPR001357 -
Car09g00680 969 ProSiteProfiles BRCT domain profile. 562 649 IPR001357 -
Car09g00680 969 Pfam BRCT domain, a BRCA1 C-terminus domain 564 646 IPR001357 -
Car09g00680 969 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Car09g00680 969 Pfam twin BRCT domain 190 252 IPR001357 -
Car09g00680 969 Pfam twin BRCT domain 103 166 IPR001357 -
Car09g00680 969 Pfam twin BRCT domain 666 727 IPR001357 -
Car09g00680 969 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Car09g00680 969 ProSiteProfiles BRCT domain profile. 182 270 IPR001357 -
Car09g00680 969 MobiDBLite consensus disorder prediction 914 938 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01137 Car-Chr4:6558638 Car09g00680 Car-Chr9:3988909 1.13E-24 transposed
Car14g00737 Car-Chr14:4136477 Car09g00680 Car-Chr9:3988909 6.13E-07 transposed
Car17g00768 Car-Chr17:6787590 Car09g00680 Car-Chr9:3988909 4.80E-07 transposed
Car17g00992 Car-Chr17:7944339 Car09g00680 Car-Chr9:3988909 1.80E-08 transposed
Car04g01136 Car-Chr4:6556694 Car09g00680 Car-Chr9:3988909 1.45E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00680 K10728 - csv:101212525 1632.46