Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00689 ATGGCTACTGTTGCTCAGCTCATTGAGCAACTTCATGCAAATATGTCTTCATCAAATGAGAAAGAACTTATTACAGCACGCCTTCTTGGAATTGCTAGAACACAAAAGGATGCTAGAACACTTATTGGTTCTCATTCTCAAGCTATGCCTTTGTTCATCAATGTCCTCAGAAGTGGGTCTTCTGTGGCAAAAGTTAATGTTGCTAGAACTTTAACCATTCTATGCAAAGATGACGAACTACGCTTGAAAGTGCTTCTTGGTGGATGCATCCCACCATTGCTCTCACTCTTGAAATCTGAATCAGTCGAGGCTAGTAAGGCCGCAGCTGAGGCGATCTATGAAGTTTCTTCAAGTGGGCTTTTGAATGATCGAGTTGGTATGAAAATATTTGTCACAGAAGGTGTGATACCCACCTTATGGGACCAACTAAATCCAAACAATAGGCAGGACAAAGTTGTAGAGGGATTCGTTACTGGATCTTTGAGAAATCTTTGCGGAGACAAGGATGGTTATTGGAAAGCCACACTTGAGGCTGGGGGAGTGGACATCATTGTTGATCTTCTCTCTTCTGACAGTGCTGCAGTTCAGTCAAATGCAGCTTCTCTCCTAGCACGCCTAATCTTGGCTTTCAGTGATAGCGTAGATAAGGTTATAGAATCTGGTGCCGTGAAAGCTTTGCTTGGGCTTGTAAGTAAGAAAAATGATATTTCTGTCCGCGCAAGTGCTGCCGATGCACTGGAGGCTCTCTCATCAAAATCAACTGAGGCCAAAAAAGCAATCGTGGGTGAGGAAGGGATTCCAGTACTTATTAGGGCTATAGTTGCCCCTTCTAAAGAGTGTATGCAGGGTAAGCATGGTCAGTCTCTGCCAGAGCATGCAACACGAGCACTGGCCAATCTTTGTGGTGGGATGTCTGCATTAATACTTTATCTAGGAGAACTTTCACTGTCCCCTCGCCTTTATGCACCGATTGCTGATATAGTTGGAGCACTTGCATACACTCTAGTGGTTTTCGAGAAGTCCCGTGATGAGGAACCCTTTAATGCTACCAAGATAGAAGATATTCTTGTAACGCTATTGAAGGCTCAGGAAAATAAGTTAGTTCAGGAGCGTGTCCTTGAAGCTATGGCTAGTCTATACGGTAACATATATTTCTCAGAATGTCTAAATCATGCAGAAACCAAAAAGGTGCTTATTGGACTTGTAACCACCGCTGCTCCTGATGTACAAGAGTACCTAATACCCTCTCTGACTAGCTTATGCTGCAATGGGGTTGGCATCTGGGAAGCCATTGGCAAGAGAGAAGGAGTTCAGTTACTTATATCATTATTGGGGTTATCAAGTGAGCAACATCAGGAGTATGCTGTTCAGTTGCTGGAAATCTTGACTGACCAGGTAGATGACAGCAAGTGGGCTATCACTGCTGCTGGTGGAATTCCTCCATTGGTTCAATTATTAGAGACAGGTTCCCACAAGGCAAGGGAGGATGCAGCTCATATTCTGTGGAATTTGTGCTGTCACAGTGAAGATATTCGAGCCTGTGTTGAAAGTGCCGGTGCCATCCCAGCATTTTTGTGGCTCTTAAAAAGTGGTGGATCAAGGGGCCAGGAAGCGTCTGCAATGGCACTTTTAAAACTTGTCCAAACTGCTGATTCTGCTACTATAAATCAGCTACTAGCTATGCTCTTAGGAGATTCTCCAAAAGATAAGGCTAATATAATTCAAGTTTTAGGTCACGTGCTTACTATGGCATCATATGAAGACTTTTTTCACACAGGTTCTGCAGCTAATAAAGGATTGAGAACACTTGTTCAAGTTCTTAACTCTTCAAATGAAGAAACTCAAGCCCATGCTGCTTCTGTTCTAGCAGACTTATTCAGCACAAGGCCAGATATTTCCGATAGTCTTGCAACTGATGAGATTGTAAATCCTTGCATGAAGCTCTTGGCCAGCAATACTCAAGTTGCCACTCAATCAGCTCGGGCATTGGCTGCCCTCTCCAGGCCCAGCAAGACAAAAGCAATGAATAAGATGTGCCATATTGCTGAAGGGGACGTCAATCCCCTGATTAAGTTGGCTAAAACATCTTCTGTTGATGCTGCTGAAACTGCAGTTGCTGCCCTGGCCAATCTTCTGTCTGATCCTCAAATAGCTGCAGAAGCTCTAGCAGAAGATGTTGTCTCAGCTCTAACGAGAGTTCTGGGAGAAGGAACTCCAGTTGGTAAGAAGAGTGCAGCTCAAGCCCTTCATCAACTGTTGAGCCATTTTCCACCTGGTGAAGTGTTCGCAAGCGAAACCCAGTGTCGTTTCATTGTCCTTACTCTAGTTGATTACTTAAGGTTTATGGATCTGGATGGGAATAATGTTGCAGATGCTTTAGAAGTCATTTCACTCTTAGTTAGGACCAAGCTAGGAGCTAGCTTGTCTTATGCACCCTGGTCTGCCCTTGCTGAGGATCCTTCCAGCTTGGAACCACTTGTGTACTGTCTTGCTGAGGGACCATCTTCACTGCAGGACAAGGTGATAGAAATTTTGTCAAGAATGTGTGGAGACCAACCTGTTATTTTAGGTGATATGTTAGTTGCTAGATCAAAATCACTTGACTCTCTTGCTAGTAAAATAATAACCTCTTCAAGTCCAGAAGTAAAGTCAGGAGGGGCTGCATTACTTATTTGTGCTATGAAGGAGCACAAACAGCAGTCGGTGGGAGCGCTTGACTCGTTTGGATGTCTGCAACTGCTTATACATGCCTTAGTGGATTTGATCAAGCAAAATTCTACTTATTCCTCTCCAGACGTTGAACTTAGGACCCCTAGAGGTTTTATGAAACGAAGTACTTTCCTAGATGGAGATAGGTTTGATGCTCCTGATCCAGCCACAGTCATGGGAGGTACTATTGCCCTCTGGTTGTTGTCAATAATTGCTTCTTTTAATGTGGAGAACAAGGTCGCTGTTATGGAAGCTGGAGGACTTGAGGCCCTGTCTGACAAACTTGAATTGGAGGATATGGAGGGTATATGGATCAGTGCCCTGCTCCTCGCTATCTTGTTCCAAGATGCGAGTGTTGCCTCATCTCCTGCAACCATGAGTATCATACCTTCACTTGCCTTTCTGGTAAGATCTGAGGAGGTGAATGATAAATTCTTTGCTGCACAGGCAATAGCCAGTCTTGTTTGTAACGGTAGCAAAGGAGTAAATCTTGCCATTGCAAATTCTGGTGCAATTGTTGGGTTAATTTCTCTGATTGGGTTTGTGGAGTCGGATATGCCAAACCTTGTTGCTTTGGCAGATGAGTTTTCTTTGACACGGAAACCAGATCAAGTTGTTCTTGAGCGTCTATTTGAAATTGAAGAAGTTAGAATTGGGTCAACTGCACGCAAAACTATACCTCTTCTAGTTGATCTTTTGAGACCATTACCAGATAGACCCGGTGCTCCTCCTGTTGCTGTTCAGCTCTTGACGTGTATCGCTGATGGAAGTGATGCAAATAAATTAATGATGGCTGAAGCTGGAGCTGTAGATGCTTTGACAAAGTACCTGTCTTTGAGTCCTCAAGACTCAACAGAGGCCATAATATCTGATCTATTGAGAATTTTATTTAGCAACCCTGATCTCATTCGTTATGAGGCATCGGCAAGTTCCTTGAATCAACTTATAGCTGTCCTACGTCTGGGGTCAAGAGGCGCAAGATTCAGTGCTGCAAGGGCCCTTTTTGAACTTTTTGATTGTGAGAGTATTAGAGATTCTGAGCTAGCCAAGCAGGCTTTCCATCCATTAGTGGACATGCTCAATGCCACATCAGAAAGTGAGCAAGGTGCTGCTCTTGCTGCATTACTTAGATTGACATCTGGATATTCTTCAAAAGCAGATTTCTTGAATGATGTGGAAGGATCACCGCTCGACAGTTTATGCAAAATTTTAACATTGTCGTCATCCTTGGAGCTGAAGACGAATGCTGCAGAACTATGTTTTGTTTTGTTCGGTAACATTAAAGTAAGAACAAATCCAATCGTCTCTGAATGCATACAGCCACTCTTATTGCTGATGCAGTCAGATTCAAGTGCAGCAGTCGAGTCTGGGGTATGTGCACTTGAAAGATTGTTGGATGATGAACAACAAGTAGAGCTCACTTTACCCTATGATATTGTGGACCTCCTTGTTAGTTTGGTATCTGGAACAAACTATAGATTGGTTGAAGCTAGCATCTGCTCTCTCATAAAGTTGGGAAAAGACCGGACTCAACTCAAAATGGATATGGTTAAGGTTGGGGTCATCGATAATTGCCTCGAGTTACTTCCAGATGCACCTAGTTCATTATGCTCCTCAGTGGCTGAACTGTTTCGCATTTTAACAAATAGTAATGCAATTGCTAGGAGTTCAGATGCTGCAAAAATAGTGGAACCTCTATTTTTGGTTTTGCTTCGTCCAGATTTTAATTTGTGGGGGCAGCACAGTGCCTTACAAGCTCTCGTAAATATCTTGGAGAAGCCGCAAAGCCTTGTGACTCTAAAACTTACTCCTAGCCAAGTTATTGAGCCTCTGATTTCATTTCTCGAGTCACCGTCTCGTGCTGTCCAGCAGCTTGGCACCGAGTTATTATCTCATCTTCTTGCACAAGAGCATTTCCAGCAAGATATTACGACTAAAAATGCAGTTGTGCCACTTGTACAGCTTGCTGGGATTGGAATATTGAATCTACAGCAAACAGCTATAAAGGCATTGGAAAAAATATCCACTAGCTGGCCCAAGTCTGTTGCTGATGCTGGAGGTATTTTCGAGCTTTCGAAAGTTATTATACAAGATGACCCTCAGCCTCCTCATGCTCTCTGGGAATCAGCAGCCATGGTTTTGTCAAACATATTACGATTCAACGCTAAATACTATTATAAAGTTCCTGTGGTTGTTCTTGTGAAAATGTTGCATTCAACTGTAGAGAGCACAATCACGGTCGCTCTCAGTGCTTTAGTTAATCACGAAAGTAATGATACGTTAAGCGCTGAACAGATGGCGGAAGCTGGTGCTATAGATGCCTTGGTGGACCTTCTAAGATCTCACCAATGTGAAGAAGCATCTGGAAGGTTACTTGAAACTCTATTTAATAATGTCAGGGTGCGAGAGATGAAGTATTTATTAGATCCACTGACCAGATCGCAGCCCGGTAAGCTTCTCGCAACTTTAGCTCTGGGAGATCTGTCACAGCATGCAGGACATGCAAGAGCCAGTGATTCGGTTTCTGCTTGTCGTGCATTGATAAGTTTGCTTGAAGATGAAGCAACAGAAGAAATGAAAATGGTGGCTATTTGTGCTTTGCAAAATTTTGTCATGCACAGTAGAACAAATAGGCGAGCAGTCGCTGAAGCGGGCGGAATATTGGTTGTTCAGGAGCTTCTTTTGTCTCCAAGTCCAGAAATTTCTGGTCAGGCAGCATTGTTGATAAAGTTCTTGTTTTCGAATCATACATTACAGGAATATGTATCAAATGAGCTCATCAGATCTTTGACAGCTGCGCTAGAGAGGGAATTGTGGTCTACTGCAACTATCAATGAAGAGGTTTTAAGAACCTTGAATGTGATATTCACCAACTTTCCTAAACTCCATACTTCTGAAGCTGCTACTCTTTCCATACCTCATCTGATCGGAGCTCTAAAATCCGGTAACGAGGCAGCTCAGGAAACCGTGTTGGATGCCTTATGTTTGCTAAAGCATTCCTGGTCGACCATGCCAATCGACATTGCAAAGTCTCAAGCTATGATTGCAGCTGAGGCCATTCCCATACTGCAAATGCTGATGAAAACCTGCCCTCCTAGTTTTCATGACAGAGCAGATAGCCTTTTACATTGCTTACCAGGTTGTCTGACTGTTATTATCAAGCGAGGGAACAACCTAAAACAGACGATGGGAAGTACAAATGCGTTCTGTCGATTGTCTATCGGGAACGGTCCTCCTCGACAAACAAAGGTTGTTAGCCATAGTACATCTCCTGAATGGAAAGAAGGATTTACTTGGGCATTTGATGTGCCTCCAAAGGGGCAAAAGTTGCACATCATCTGCAAGAGCAAAAGCACTTTCGGGAAGTCTACACTAGGAAGAGTAACGATCCAGATCGACAAAGTCGTAACGGAGGGATTGTACAGTGGATTATTCAGCCTAAATCACGATGGAGACAAAGACGGTTCTTCTCGAACGCTCGAAATCGAAATAATATGGTCAAACAGAATATCAGATGGAGAACTATGA 6237 43.32 MATVAQLIEQLHANMSSSNEKELITARLLGIARTQKDARTLIGSHSQAMPLFINVLRSGSSVAKVNVARTLTILCKDDELRLKVLLGGCIPPLLSLLKSESVEASKAAAEAIYEVSSSGLLNDRVGMKIFVTEGVIPTLWDQLNPNNRQDKVVEGFVTGSLRNLCGDKDGYWKATLEAGGVDIIVDLLSSDSAAVQSNAASLLARLILAFSDSVDKVIESGAVKALLGLVSKKNDISVRASAADALEALSSKSTEAKKAIVGEEGIPVLIRAIVAPSKECMQGKHGQSLPEHATRALANLCGGMSALILYLGELSLSPRLYAPIADIVGALAYTLVVFEKSRDEEPFNATKIEDILVTLLKAQENKLVQERVLEAMASLYGNIYFSECLNHAETKKVLIGLVTTAAPDVQEYLIPSLTSLCCNGVGIWEAIGKREGVQLLISLLGLSSEQHQEYAVQLLEILTDQVDDSKWAITAAGGIPPLVQLLETGSHKAREDAAHILWNLCCHSEDIRACVESAGAIPAFLWLLKSGGSRGQEASAMALLKLVQTADSATINQLLAMLLGDSPKDKANIIQVLGHVLTMASYEDFFHTGSAANKGLRTLVQVLNSSNEETQAHAASVLADLFSTRPDISDSLATDEIVNPCMKLLASNTQVATQSARALAALSRPSKTKAMNKMCHIAEGDVNPLIKLAKTSSVDAAETAVAALANLLSDPQIAAEALAEDVVSALTRVLGEGTPVGKKSAAQALHQLLSHFPPGEVFASETQCRFIVLTLVDYLRFMDLDGNNVADALEVISLLVRTKLGASLSYAPWSALAEDPSSLEPLVYCLAEGPSSLQDKVIEILSRMCGDQPVILGDMLVARSKSLDSLASKIITSSSPEVKSGGAALLICAMKEHKQQSVGALDSFGCLQLLIHALVDLIKQNSTYSSPDVELRTPRGFMKRSTFLDGDRFDAPDPATVMGGTIALWLLSIIASFNVENKVAVMEAGGLEALSDKLELEDMEGIWISALLLAILFQDASVASSPATMSIIPSLAFLVRSEEVNDKFFAAQAIASLVCNGSKGVNLAIANSGAIVGLISLIGFVESDMPNLVALADEFSLTRKPDQVVLERLFEIEEVRIGSTARKTIPLLVDLLRPLPDRPGAPPVAVQLLTCIADGSDANKLMMAEAGAVDALTKYLSLSPQDSTEAIISDLLRILFSNPDLIRYEASASSLNQLIAVLRLGSRGARFSAARALFELFDCESIRDSELAKQAFHPLVDMLNATSESEQGAALAALLRLTSGYSSKADFLNDVEGSPLDSLCKILTLSSSLELKTNAAELCFVLFGNIKVRTNPIVSECIQPLLLLMQSDSSAAVESGVCALERLLDDEQQVELTLPYDIVDLLVSLVSGTNYRLVEASICSLIKLGKDRTQLKMDMVKVGVIDNCLELLPDAPSSLCSSVAELFRILTNSNAIARSSDAAKIVEPLFLVLLRPDFNLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLISFLESPSRAVQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKSVADAGGIFELSKVIIQDDPQPPHALWESAAMVLSNILRFNAKYYYKVPVVVLVKMLHSTVESTITVALSALVNHESNDTLSAEQMAEAGAIDALVDLLRSHQCEEASGRLLETLFNNVRVREMKYLLDPLTRSQPGKLLATLALGDLSQHAGHARASDSVSACRALISLLEDEATEEMKMVAICALQNFVMHSRTNRRAVAEAGGILVVQELLLSPSPEISGQAALLIKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLNVIFTNFPKLHTSEAATLSIPHLIGALKSGNEAAQETVLDALCLLKHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDRADSLLHCLPGCLTVIIKRGNNLKQTMGSTNAFCRLSIGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKSTFGKSTLGRVTIQIDKVVTEGLYSGLFSLNHDGDKDGSSRTLEIEIIWSNRISDGEL 2078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4067046 4074768 + Carg27617-RA Car09g00689 154426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00689 2078 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 477 519 IPR000225 GO:0005515
Car09g00689 2078 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 221 265 IPR000225 GO:0005515
Car09g00689 2078 ProSiteProfiles C2 domain profile. 1931 2048 IPR000008 -
Car09g00689 2078 Pfam C2 domain 1951 2049 IPR000008 -
Car09g00689 2078 Pfam Armadillo/beta-catenin-like repeat 470 505 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00689 - - - csv:101220047 3691.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00458 Car-Chr7:2328596 Car09g00689 Car-Chr9:4067046 0 dispersed
Car09g00689 Car-Chr9:4067046 Car01g00541 Car-Chr1:3209827 2.58E-06 dispersed
Car15g00908 Car-Chr15:5521138 Car09g00689 Car-Chr9:4067046 9.15E-08 transposed
Car04g01152 Car-Chr4:6617979 Car09g00689 Car-Chr9:4067046 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g243 . . . . Bpe02g00638 . . Bma01g02075 . . Cma01g01381 Cma09g00780 . . . Cpe06g00615 . . . . . . . . . . . . . . . . . . . Lsi04g02405 Csa04g01786 . . . . . . . . . . Sed05g2372 Cmo01g01431 Cmo09g00772 . . . Car09g00689 . Cpe02g00558 Bhi09g02699 Tan01g4048 Cmetu09g1153 . . Mch11g0844 . Cla11g01545 Cam11g1609 Cec11g1637 Cco11g1639 Clacu11g1767 Cmu11g1583 Cre11g2000 . . Chy07g00624 Cme07g00829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010101 0 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00689 Car_Chr09 FPKM 10.935246 12.479972 6.380091 5.524604 8.890164 8.720437 8.907326 6.69548 6.102531 5.858881