Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00711 ATGGACTTGGCCACCAAATTTCTTCGCACTGTAACCAGCGCCACCAACAACAACACCCTAATCAACGTCTGTTTGGTCATTTCCTTTGGCGCATTGAGCGCAAGATCAATCAAGCAGCAGCGGGAAATCGAAGCTCTGGAGGCTGAGAAAGATTCGCTTCTCAATTCCAATAAATCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATACTCTGATGCCTCAACAGATTCCGCTTTGGTACCTCTCGCCAGGATCAAAGCTATCTATGGCGAAGCTCCGGTATCCCCGTCCGGAGCAGAACAAGCTGCAACCGGAGATGCAAATTCACAAGGCTCCAAACTCATGGTTTAA 357 48.46 MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSLKKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLMV 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4223663 4226592 + Carg17030-RA Car09g00711 154448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00711 118 MobiDBLite consensus disorder prediction 96 118 - -
Car09g00711 118 MobiDBLite consensus disorder prediction 103 118 - -
Car09g00711 118 PANTHER OS06G0149500 PROTEIN 1 117 - -
Car09g00711 118 Coils Coil 36 63 - -
Car09g00711 118 PANTHER OS06G0149500 PROTEIN 1 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00711 - - - mcha:111011272 191.045
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g273 . Blo12g01129 . Bda03g00008 . . Bma04g00006 . . . . . . . . Cpe06g00631 . . . . . . . . . . . . . . . . Cone7ag1535 . . Lsi04g02389 Csa04g01804 . . . . . . . . . . . . Cmo09g00789 . . . Car09g00711 . . Bhi09g02671 . . . Hepe01g2281 . . Cla11g01535 Cam11g1595 Cec11g1624 Cco11g1625 Clacu11g1753 Cmu11g1569 Cre11g1986 . . Chy07g00646 Cme07g00855
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003366 1 2 1 2 1 0 2 1 0 1 1 1 1 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00711 Car_Chr09 FPKM 23.110584 26.968662 15.560296 15.097837 28.764763 24.77619 29.103727 13.28866 11.732667 13.221255