Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00724 ATGTCTGTAATCGGATGGTATGGACCTCTGATTGATCTCTCTGAAGCTGCTCTTCATGTTGGCGATTTTGTTCAACTCGTCGTCTTCATTCATCGATCCACTCCTGTTGAGTACAAATTGTCTAATGGTGGAGAGGTCATAAGGACGGACATCAAAGTAGCTGATGATACACGGTCGTTTTTCTCTGTATCATTATGGCAGAAGAAAATGGCAGCCACAGCAATTCCTGGCGATGTTGTATTGTTGCAGAATGTGAAACTAAGGAAATTCGGAGATTCAGTTGAGGCAACAACTGTCCAGTGTTCTTCCCTAGTGTGTATAATCCACCCTTACGAAACACTTTTCTCTGAAGGTGTAGACGAATTAACGGCCAATTGTCGAGTTGGTTTAGTAGCTAAAGAAAAGCTCAGGAAGGTAGTAGAATGGGTGAAGGGGGCTCGATCTACCTTCCGCAACATAAAATGGCATAGTGACCAATCACTCGTTTTCAACTTATTTTATGATCAAAACCATTTCTTCCGCAACTGGAAATTGCCTGAGAAAAGGATGTCCAGAGACTGTTTCTCGCTATCCGAAGTATTATGCCTAACTGAATCATGCAAGGTCATATTTGATGCATCAGTTGGTGAAATGTTTTCGTTACCCCCCTTGATTGAGCTTGATGAACCTCGAAAAGAAAAGTTGTTTGTTAGCAGGCGATTGTACGATGAAGAGGATTTTGATCTAGCAGAAGATCTCATTTGCACCGGCTGTCAGTTATGTGGTACACCTTTAGGTCTGGAAAGTGGATCCGTGGTTGATCAGATTTCTGCTCCACTTTATTGTTCAAAAAGCTTGAACCGCCTCCACGTAGTAAGCATGATATATAGGCCTTTCATGCTATACGTGTGGGATGAATCAGAATGCATTCCTCTGCTTGTTAAGAATCAAGCAGCAGAAATCTTGTTTGGTAACATCAAAGCTGACAAGATTTACTCCCATTACAGTTGCCATAAGTCCTATTCCCATCCTAATTCAGAAGCTATTGTTGAATCAAGCCACTCAGGTGCTCCGGTTGCTAATTCTCCTCGAGCTATTGAGAAAGAACAGAGGCCCTCTAATAATTTATATTTCATCTGGTTGATCCTTCTGAAAATGTTGCTGCAACAAGGAAAAAATAGCCCTCTTAAATTTGAAGTTACAGTAAATACCAGCTTGGACAGGGAGAATGGGAGATTTGAGATGGTTTCTTCCACATTCCCATGCTCCTCAACCAATCGATCTTTGGACTCGGCACATTTGTGA 1284 41.82 MSVIGWYGPLIDLSEAALHVGDFVQLVVFIHRSTPVEYKLSNGGEVIRTDIKVADDTRSFFSVSLWQKKMAATAIPGDVVLLQNVKLRKFGDSVEATTVQCSSLVCIIHPYETLFSEGVDELTANCRVGLVAKEKLRKVVEWVKGARSTFRNIKWHSDQSLVFNLFYDQNHFFRNWKLPEKRMSRDCFSLSEVLCLTESCKVIFDASVGEMFSLPPLIELDEPRKEKLFVSRRLYDEEDFDLAEDLICTGCQLCGTPLGLESGSVVDQISAPLYCSKSLNRLHVVSMIYRPFMLYVWDESECIPLLVKNQAAEILFGNIKADKIYSHYSCHKSYSHPNSEAIVESSHSGAPVANSPRAIEKEQRPSNNLYFIWLILLKMLLQQGKNSPLKFEVTVNTSLDRENGRFEMVSSTFPCSSTNRSLDSAHL 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4286241 4290285 - Carg17044-RA Car09g00724 154461

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00724 - - - cpep:111797730 778.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g296 . Blo12g00677 . . . . . . . . . Cma09g00809 . . . Cpe06g00643 . . . . . . . . . . . . . . . . . . . Lsi04g02376 Csa04g01817 . . . . . . . . . . . . Cmo09g00802 . . . Car09g00724 . . Bhi09g02649 . . . . . . Cla11g00771 Cam11g0806 Cec11g0787 Cco11g0793 Clacu11g1052 Cmu11g0913 Cre11g1251 . . Chy07g00665 Cme07g00873
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012326 1 3 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00724 Car_Chr09 FPKM 7.993007 9.184733 11.950107 15.1241 10.206749 6.06201 10.635831 13.405251 14.901939 14.332545