Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00768 GAGCTCGTTAAGACGTGTATTCTCGATCCGGAGTCTCATAGTCTCTTGATTTCCTATATTTTTGCTCCAACCATTTCCACAAGCAGCAGAACCACCACCAACACCACCACCACCACCACGGAGCTGCCGGAGTTGGCAATGGAGGCGAAGAGCTACGAAGGCAAGCATAATCTTAAAGATAAGGCGTACAAGGAAGGTGTGATCGACGACGATTTAGAATATGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGTACAGCAGTTTCTGGCCGTGGACGATCTGGCAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTAAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTGACAGAATTCGACGACGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACAGCTGCATATCAGA 744 51.34 ELVKTCILDPESHSLLISYIFAPTISTSSRTTTNTTTTTTELPELAMEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSSGYKQLHIR 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4528381 4529363 - Carg17090-RA Car09g00768 154505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00768 248 MobiDBLite consensus disorder prediction 204 219 - -
Car09g00768 248 MobiDBLite consensus disorder prediction 189 248 - -
Car09g00768 248 MobiDBLite consensus disorder prediction 105 126 - -
Car09g00768 248 Pfam SBP domain 124 197 IPR004333 GO:0003677
Car09g00768 248 ProSiteProfiles Zinc finger SBP-type profile. 121 198 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00768 - - - csv:101215375 302.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00748 Car-Chr8:4870797 Car09g00768 Car-Chr9:4528381 3.71E-37 dispersed
Car09g00768 Car-Chr9:4528381 Car18g00018 Car-Chr18:83663 2.13E-34 dispersed
Car11g01603 Car-Chr11:12760660 Car09g00768 Car-Chr9:4528381 6.62E-51 wgd
Car13g00518 Car-Chr13:7238203 Car09g00768 Car-Chr9:4528381 8.88E-45 wgd
Car18g00359 Car-Chr18:2228120 Car09g00768 Car-Chr9:4528381 1.68E-44 wgd
Car07g00197 Car-Chr7:1110638 Car09g00768 Car-Chr9:4528381 3.00E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4088 PF03110 SBP 2.60E-31 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00768 Car_Chr09 FPKM 0.0 0.0 0.0 0.729192 0.0 0.0 0.0 0.0 0.0 0.0