Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00785 ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCTGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCGCACCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA 777 47.36 MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQLHPNYIRSSSHPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4625193 4625969 + Carg17107-RA Car09g00785 154522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00785 258 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Car09g00785 258 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
Car09g00785 258 Pfam RING-type zinc-finger 33 77 IPR027370 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00785 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101206686 413.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01030 Car09g00785 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01133 Car-Chr3:9124796 Car09g00785 Car-Chr9:4625193 7.85E-52 dispersed
Car09g00785 Car-Chr9:4625193 Car19g00776 Car-Chr19:8474243 2.13E-55 dispersed
Car01g01030 Car-Chr1:9780746 Car09g00785 Car-Chr9:4625193 6.15E-149 wgd
Car13g00532 Car-Chr13:7308863 Car09g00785 Car-Chr9:4625193 2.38E-52 wgd
Car07g00207 Car-Chr7:1150522 Car09g00785 Car-Chr9:4625193 9.10E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011682 1 1 0 2 2 0 2 1 0 0 1 0 0 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00785 Car_Chr09 FPKM 0.0 0.0 0.0 0.0 0.862895 0.9303 0.596101 0.296584 0.0 0.0