Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00801 ATGAAGAACAAGAACAACAAGAAATCAAAAGATCAGATTTTCCCGACCATTTCTTGTTCGGAACTGCCACTTCCTCGGCACTTTATTGTACAGATCGAAGGAGCTTTTCTTGAAGATGGAAGGGGAACGAGTAACTGGGATGCGTTTTCCCACATTCCAGGAGGACGATTTGGTAAAATCAACAGAAGAGGGATCTCTTTCTACAATAAAGTAATTGATCGTTTGTTGCTAAGAGGCATAGAGCCTTTTGTGACCATTCACCATCATGACCTCCCTGATGAGCTGGACAAAAGATATGGAAGGCAAACAAGGCGGATCCATAGGCATAGTGGCATTTGGACACATGCAGAGAAAAAGGTTGTAAAGGGAAGTTTGGACTACATTTATGTGAACCATTACACCACACTTTACACAAAGGACTGCCTTCATTCTATCTGCTCCGACGATGCAAATCGTCCAATTAAAGGCTTCCTCGACACCACCGGCTACCGGGACGGTGTTTCCATTGGTGACCCAACTGGAGTTGACAGATTCTTTGTTGTTCCAAGAGGTTTGGAAAAGATCATTAATTATATCAAAGAAAGGTATCCCGACAACCCCATTTATGTCACTGAAAATGGTTACTCTGCACCGTCTAGTGACGGTAACAACGTTGAAGACATGGTAAATGACACGAAACGAGTCAATTATCACAAGAACTACCTCGCTTCCTTGGCTAAAGCAATGAGGAATGGTGCTGACGTGAGAGGGTATTTTGCATGGTCGTTAATGGACAACTTCGAATGGGCCGATGGGTACGGTACGAGGTTTGGGCTTTTGTATGTGGACCGACAGACACTTGAGCGTCGGCCCAAACTGTCGGCCCAGTGGTTTGCTTCCTTTCTCGGCGGACATCCACAAGCACTTGCTAAACCTTCATCCATATTGAATACAAATGCCTTTGATTCCCTCATGTAA 957 44.51 MKNKNNKKSKDQIFPTISCSELPLPRHFIVQIEGAFLEDGRGTSNWDAFSHIPGGRFGKINRRGISFYNKVIDRLLLRGIEPFVTIHHHDLPDELDKRYGRQTRRIHRHSGIWTHAEKKVVKGSLDYIYVNHYTTLYTKDCLHSICSDDANRPIKGFLDTTGYRDGVSIGDPTGVDRFFVVPRGLEKIINYIKERYPDNPIYVTENGYSAPSSDGNNVEDMVNDTKRVNYHKNYLASLAKAMRNGADVRGYFAWSLMDNFEWADGYGTRFGLLYVDRQTLERRPKLSAQWFASFLGGHPQALAKPSSILNTNAFDSLM 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4846117 4852011 - Carg12755-RA Car09g00801 154538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00801 318 Pfam Glycosyl hydrolase family 1 113 294 IPR001360 GO:0004553|GO:0005975
Car09g00801 318 Pfam Glycosyl hydrolase family 1 52 105 IPR001360 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00801 K05350 bglB; beta-glucosidase [EC:3.2.1.21] - csv:101215384 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00801 Car-Chr9:4846117 Car16g00577 Car-Chr16:3628250 7.77E-08 dispersed
Car14g00818 Car-Chr14:4810991 Car09g00801 Car-Chr9:4846117 6.64E-19 dispersed
Car09g00801 Car-Chr9:4846117 Car05g00384 Car-Chr5:2203245 2.12E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g268 Blo03g00640 . Bda07g00284 . . . . . . . . Cma09g00883 . Car09g00801 . Cpe06g00707 . Bhi09g02020 Tan01g4429 Cmetu04g2876 . Hepe01g1367 Mch11g1093 . . . . . . . . . . . . . . . . . . . . Bpe11g00493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000954 1 8 1 1 1 0 1 3 0 4 2 4 1 4 4 0 0 1 1 3 3 4 1 2 1 9 2 1 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00801 Car_Chr09 FPKM 3.433022 5.373676 0.574438 0.407664 1.267115 1.385092 1.763742 0.532859 0.094262 0.099313