Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00828 ATGGCCGACTTGTTTGGCAGCTGGAATTCCCGAATTCGGATCTCGATTATCATCTTGTTTGTGGGTTTCTGTTCTTCCTGTTGCTGCAGCAATTCTCGCAAAGATTCGTCTTCTATTCACTCGCTCCTGCGCTCCATGGGGCTGCCGGCAGGGCTGGTGCCCAAGCAAGTGAAATCTTACACATTGGGTGAAAATGATCGGCTGGAAGTGTACTTGGATGGGCCATGTATGGCCAAATATGAAAACAGAGTGATTTTTGAAAGTGTTTTTAGTGCTAATCTTAGCTATGGGAGCTTGATTGGAGTGGAGGGTATGTCTCAGGAAGAGCTCTTTCTATGGCTGCCGGTTAAGGATATCATTGTTAATGATCCTTCTTCTGGTGTCATTCTTATTGATATTGGTGTCGCGCATAAACAGCTCTCTTTGTCTCTCTTTGAAGATCCTCCTGATTGTAACCCTCAAGCTGCACTGAGGAATCCTCTGAGGAAGAGAAGAGACTTTGAATCTCTTAGATAA 516 44.96 MADLFGSWNSRIRISIIILFVGFCSSCCCSNSRKDSSSIHSLLRSMGLPAGLVPKQVKSYTLGENDRLEVYLDGPCMAKYENRVIFESVFSANLSYGSLIGVEGMSQEELFLWLPVKDIIVNDPSSGVILIDIGVAHKQLSLSLFEDPPDCNPQAALRNPLRKRRDFESLR 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5055418 5057196 + Carg12782-RA Car09g00828 154565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00828 171 Gene3D - 25 153 IPR036758 -
Car09g00828 171 PANTHER - 10 170 - -
Car09g00828 171 SUPERFAMILY At5g01610-like 13 153 IPR036758 -
Car09g00828 171 PANTHER T31J12.3 PROTEIN-RELATED 10 170 IPR007493 -
Car09g00828 171 Pfam Protein of unknown function, DUF538 40 146 IPR007493 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00828 - - - csv:101218420 263.462
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00828 Car16g00580 CCT
Car04g00868 Car09g00828 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00828 Car-Chr9:5055418 Car16g00870 Car-Chr16:6514873 6.01E-70 dispersed
Car16g00580 Car-Chr16:3642988 Car09g00828 Car-Chr9:5055418 1.03E-85 wgd
Car04g00868 Car-Chr4:4998039 Car09g00828 Car-Chr9:5055418 4.19E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g389 . . . Bda09g00379 Bpe09g00204 Bpe08g01146 Bma10g00527 Bma13g01009 Cmo16g00927 . Cma01g01167 Cma09g00912 . Car09g00828 Sed04g3131 Cpe06g00733 Cpe02g00735 Bhi09g01969 Tan01g4479 Cmetu04g1855 . Hepe01g1330 Mch11g1131 . . . . . . . . . Cone9ag0118 Cone14ag1115 Cone15ag1129 Lsi04g01261 . Chy04g01040 . Blo07g00927 . Bda05g00744 Bda12g00878 . Bpe03g00810 Bma07g01320 . . Cmo01g01222 Cmo09g00905 . . Car04g00868 Car16g00580 . Cpe01g00841 . . . . . . . Cla05g01559 Cam05g1666 Cec05g1671 Cco05g1711 Clacu05g1661 Cmu05g1554 Cre05g1667 . . . Cme04g00766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013035 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00828 Car_Chr09 FPKM 5.124051 3.950956 9.910006 9.77868 13.518731 14.416985 13.487672 8.055585 9.195939 8.560317