Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00859 ATGATCGCCATTATCCTTCTTCTCATCACCATCTTCGTCTATCTCAGGCTTAGAACCACCTTCTTCTCCGCCGCAGCGGCGAAAAACCTTCCTCCGGGGCGGCTGGGGGTCCCATTTATAGGCCAAAGCCTGAGTCTGCTTCGAGCCATGCGAGCAAACTCGGCCGAGCAATGGCTGCAGCAGAGAGTGGCTAAGTATGGGCCAATTTCGAAGATGACCCTTTTCGGGAAACCGACGGTGTTTGTACATGGGGTGGCGGCGAACAAGGCGGTGGTGTTTTCGGGGGAGGAGGAGGCGGTGTCGAACCGGCAGACGGAGTCGTTGAGGAGGATCTTGGGAGAGAGGAATTTGACGGAGTTGAGTGGTGAGGATCATAAGAGGGTTAGAGGGGCATTGGTTTGGTTCTTGAGGCCTCAGAGCTTGAAAGGGTTTGTGGGGAAGATGGATGGAGAGGTTAGGAAGCATTTGAACTTGCATTGGCATGGCAACAAGGAAGTCATTGTAGCACCATTGATGAAAACACTAACCTTTGACATCATATGCTCTCTCCTGTTTGGGATTGAAGAAGGGCCAACAAGAAAGAGCATAATAGAATGCTTCAAAACAATGGTGGATGGGATTTGGTCTGTTCCAATCAACCTGCCATTCACAAGGTATAGCCATAGCCTCAAAGCAAGTGCAAAAGTTCAACAGATATTGAAGCAGCTTTTGAAGGACAAGGCACAAAAAATGGAAGGAGAAGAAGAAGAAAAGGAAGAGGATAAGAACCTGATTACTTGTTTGCTTAGCATCAAGAACAAAGACAAAGAACAAGCTTTGAGTGAGGAGGAAATTGTGCACAATATCATCCTTCTATTGATTGCTGGACATGACACAACATCCATTTTGATTACTCTTATGCTTAGGGTTATGGCTACAAACCCAACTGTTTATGCAGCTGTTCTTCAAGTCTACGCACTGCAATCTTTTATGGGTGCCCGTGAGCACCGATTGGCTCGGTCCCTTTCTGTGCGCGGCGATGAGTCAAGCGATCGTCCCCTATGGCTCTCGAAACAGAAAGGATTTGAGAAGACTCCAGGAATGAGTTGA 1089 47.84 MIAIILLLITIFVYLRLRTTFFSAAAAKNLPPGRLGVPFIGQSLSLLRAMRANSAEQWLQQRVAKYGPISKMTLFGKPTVFVHGVAANKAVVFSGEEEAVSNRQTESLRRILGERNLTELSGEDHKRVRGALVWFLRPQSLKGFVGKMDGEVRKHLNLHWHGNKEVIVAPLMKTLTFDIICSLLFGIEEGPTRKSIIECFKTMVDGIWSVPINLPFTRYSHSLKASAKVQQILKQLLKDKAQKMEGEEEEKEEDKNLITCLLSIKNKDKEQALSEEEIVHNIILLLIAGHDTTSILITLMLRVMATNPTVYAAVLQVYALQSFMGAREHRLARSLSVRGDESSDRPLWLSKQKGFEKTPGMS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5260492 5264295 - Carg12813-RA Car09g00859 154596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00859 362 MobiDBLite consensus disorder prediction 335 362 - -
Car09g00859 362 MobiDBLite consensus disorder prediction 335 351 - -
Car09g00859 362 Coils Coil 230 257 - -
Car09g00859 362 Pfam Cytochrome P450 31 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00859 - - - csv:101212103 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00859 Car-Chr9:5260492 Car10g00779 Car-Chr10:4221806 4.95E-41 dispersed
Car09g00859 Car-Chr9:5260492 Car04g02708 Car-Chr4:20966689 8.55E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g494 . . Bda07g00357 Bda09g00396 . . . . . . . Cma09g00945 . Car09g00859 Sed10g2110 Cpe06g00761 . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00944 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00859 Car_Chr09 FPKM 36.329235 30.35664 24.626648 20.399292 9.853435 12.32765 13.167956 3.407521 3.860627 3.439532