Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00874 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGTAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGTTTGACATCGTCGGAATCTGAACCGCGGAGGAGTCTCCGTCGCCGGAATGTGAGGTACAACGTGGATTTTGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGGACGAGAGGAGGAGAGAGAAGAAGTTGAAGCTTGTTGTGAAGTTGAATCAAGGTAGAGATGGAACTCATCTATCTCCGATGTCTCGACTTGCTAGGTCAGGAGCGCGTGATGCACACGCGCCGGAGTATGGTTCGTCTGCGTCGGAATGGGAAGATGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGAGGCGGCGGTGGTGGTGGTGGTGAAGAAGAAGATGAAGATGAAGATTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGAAGGAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCTGGGACTCCCTCAGATCGATCATCCGGGCTACCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAGCTTCAGAAGAAGGATACTTATGGTGTTTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCCACCGTGAGGAATAAGTTGGCTAATGGATCATATTCAATTCTGGAACAGTTTGAGAGCGATGTTTTTCTTATATGCTCAAATGCAATGCAGTACAATTCACCAGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCCAAGAAGAGATTCGAGAGGGTAAGAATTGAAGTCGAACGCTCTGAGAAAGAGTTGAAATTGGAGCAGAGTACAAAATCGAATTCGTACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACCCTTGCTGCCACAGGAGATGTACAGAACGGTTCGAATCCGATCCACGGTGTTAACTGTGAGGTACCTAGCAATAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCTTTGATACTACTAATCTGGACAAGGCTGAAGAGCTCTTCTCAGGTATTCTGAATAATGAGACGTTTATCAATAGGAACCAATGCATTCTTGTTAATGTCACTTTTATAGGAAAGGGTATTCTAGGTAAATTGGGAAGAAAGACGTCTGTGCTTGACGACAACCGCCGTGCAACTTACAACATATCTAATTCACCTGCGCCACGATCCGAGTCAATATTTTCAACCTTCGAGGATGAAATAAGACAGCTTGTTCCGGTTGGGCTTCATGCGGAGTATGCCTATGCTAAGAGTCTGGCTCGATTTGCTGCAACACTCGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGTCGTACCTGTTGGATGTAAATTCGGACGTGGTTGGGTTGGAGAATACGAGCCACTTCCAACTCCTATATTAATGTTTGAGAACCACAAGCAGAAGGAACTTGGTTTAAATCGTAACTTGCATTCTACCAGAGAATTTAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCTAAGATGGAACATTCTTTTAGTGCACCATGTACAGAAGTGAATGGATTTGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTCCTTAGGTCCACCACCCCAAATCCTGGTCCATCTCCACAGCAAAACCTGCAGACCAAGAATTTTACTGAGGTAGAGAGGGTTAAAAAGCAAGTCGAGGTAAATTCCTTGCCTTCACCAAGACAAAATAAAGTTGATCTTGGTGTAGAGAAGCAACTTCCAACCAATTCGAATATGTCTACGTCTAGGTCTAGAGATATGTCGTCGGTAAACTTAAATCTTGTTCAATCTGCGCCTTATAAACTGCCCGGTGTTAATGGCGTTGCAACTGGTGGACTGCCTAATGGAAAATTCCCGAGCAATTGTTTGAATAGTCCACGGGCTGCTTTATCGTCGTCTAGCTTGCCTTCTCAAACAGCCCCTGTGGCAACTTCCCATGGACAGGATCTGGGTCCTGGCAAGCCAGTACAATTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCCTCATGTGATTCTCCGCCAGTTTTGTCATCAGTCCCTTCTGCTATGAGAGATGATTCGAATAATGCTGCAGCAGTAGCTTCTCGTGCGTGGATGTCGATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATACTTCCACTCCTAAAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGGGAGTTTCATCCGCAAATGGCACGAGCGTGGGGGGAGTTTCGTGCTGGAGGTAATCAGCTTCTATCTGAGAGGAACAATTTCCCTATGCAGCCATTTGTTTCACAAGCTTCTCTTGTACCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTCCAGGCTGACATGTCTAAGTTCCAGTTGCAGTCGACATGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTTCCTCCCGACTTGAATATCGGTTTTCAATCACCCGGGTCTCCCGTGAAACAATCGTCTAGTGTTTTGGTCGACTCCCAGCAGCCAGACCTGGCCTTGCAACTTTAA 2742 46.02 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNVDFDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPMSRLARSGARDAHAPEYGSSASEWEDDEPERKPLKKRRIGGGGGGGGEEEDEDEDYDDQIRGDENEDDDIDEERGRRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSILEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKRFERVRIEVERSEKELKLEQSTKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNGSNPIHGVNCEVPSNNIDGQVEGSSSFFDTTNLDKAEELFSGILNNETFINRNQCILVNVTFIGKGILGKLGRKTSVLDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVPVGLHAEYAYAKSLARFAATLGPIAWKVASQRIEQVVPVGCKFGRGWVGEYEPLPTPILMFENHKQKELGLNRNLHSTREFRKDGKPSDTPLPKMEHSFSAPCTEVNGFARGSTLDGKSSFLRSTTPNPGPSPQQNLQTKNFTEVERVKKQVEVNSLPSPRQNKVDLGVEKQLPTNSNMSTSRSRDMSSVNLNLVQSAPYKLPGVNGVATGGLPNGKFPSNCLNSPRAALSSSSLPSQTAPVATSHGQDLGPGKPVQLMRMMSERAPKQENSSNQSSCDSPPVLSSVPSAMRDDSNNAAAVASRAWMSIGAGGFKQVRDTSTPKSQISADSLYNPAREFHPQMARAWGEFRAGGNQLLSERNNFPMQPFVSQASLVPNEQQLQNRSMIYPQLVQADMSKFQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5335676 5340689 - Carg12828-RA Car09g00874 154611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00874 913 MobiDBLite consensus disorder prediction 32 48 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 685 702 - -
Car09g00874 913 ProSiteProfiles Bromodomain profile. 201 271 IPR001487 GO:0005515
Car09g00874 913 ProSitePatterns Bromodomain signature. 207 263 IPR018359 -
Car09g00874 913 MobiDBLite consensus disorder prediction 1 15 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 889 913 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 133 157 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 685 753 - -
Car09g00874 913 Coils Coil 278 305 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 111 132 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 723 750 - -
Car09g00874 913 Pfam Bromodomain 195 275 IPR001487 GO:0005515
Car09g00874 913 MobiDBLite consensus disorder prediction 571 595 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 865 913 - -
Car09g00874 913 MobiDBLite consensus disorder prediction 1 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00874 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1460.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00998 Car09g00874 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01587 Car-Chr1:13145250 Car09g00874 Car-Chr9:5335676 2.80E-63 dispersed
Car09g00874 Car-Chr9:5335676 Car19g00614 Car-Chr19:7603348 1.79E-85 dispersed
Car01g00998 Car-Chr1:9447600 Car09g00874 Car-Chr9:5335676 0 transposed
Car01g00997 Car-Chr1:9445024 Car09g00874 Car-Chr9:5335676 3.58E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00874 Car_Chr09 FPKM 0.226276 0.0 0.0 0.0 0.670198 0.754304 1.129415 0.891834 0.607723 0.202195