Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00877 ATGGTCTGGACGAGAGGCCCTGCCGTCGGCCGCGGCTCATCTGCCACCGTCTATTTGGCCACAGACGCCTCCTCCGGCCACCACTTCGCCGTCAAGTCTACCGACCTCTCTTCATCAGCGTTGTTGCAGAAGGAACACGCTCTTCTTTCGGAATTGAGCTCTCCATACCTTATCAAGTGCTTAGGTTTCGACATTGAAACCGAAACCTTCAAGATTCCGGTGTTCAATCTGTTCATGGAGTATTTGCCGGAGGGGACGCTGTGGGATGCGATTCAGAGCAGCGGCGGCCGGATGGAGGAATCGGCGATCCGAGTGTTTTCGCGCCAGATTTTGAAAGGATTGGAGTACCTTCACGGTAATGGATTGGCGCATTGCGATATCAAGAGCCGGAATCTGTTAATGAGTGATGCAGGTTTAAAAATCGCCGATCTAGGTTGTGCGAAATTTGTGGATGGAGTTTCTGGAAATGGAGTTAGGGATTTTTCTGGTTCGCCGGCGTTTATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCAGCGGATATTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGCGAACATCCGTGGGCGGATATAAAAGATCCGGTGTCGGCGTTGTATCGGATTGGATTTACCGGCGAGTTGCCGGAGGCTCCACGGTGGTTATCGGAGAGGGCGAGGGACTTTGTCGCTAAGTGTTTGATAAAAGTCCCGAAAGAAAGATGGACTGCGAAACAGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCCGAGTCGGAAATTGAATCTTCGAGGATGAAAACGGTGAATTCTTCTCCGAGGTGTGTTTTGGATCAAAGCTTTTGGGATTCAATGGAAGATTCAAAGACTCCATTGAAGGTAACGCATCAAGCTTCGTTGGAGGATTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCGTCCGATTGGGACTTGGAAGGGGACGATGGAGATTGGATTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTTCAGCTACAGTTGAAGAAGAAGAAGAGCTGGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTCATATGATGATGATTCTGGTATTATGAACAATGGGAGAGGAGGATTAGAAATGGAAATTGGGAGATTTGGAGGTAAAAATTGTAATTGTTCTTCATTAATGCAATTTGATCTTTTATTTCCTCAAGATCTTCATCTTCTGTTGTTTCATTGCCTCAAGATTCATGGTTTTGATCAAAGAAAAAGTGTTTTTAAGCCAATTCCAACCGATCATACCAAGCTTTAA 1368 46.27 MVWTRGPAVGRGSSATVYLATDASSGHHFAVKSTDLSSSALLQKEHALLSELSSPYLIKCLGFDIETETFKIPVFNLFMEYLPEGTLWDAIQSSGGRMEESAIRVFSRQILKGLEYLHGNGLAHCDIKSRNLLMSDAGLKIADLGCAKFVDGVSGNGVRDFSGSPAFMAPEVARGEEQGFPADIWAFGCTVIEMATGEHPWADIKDPVSALYRIGFTGELPEAPRWLSERARDFVAKCLIKVPKERWTAKQLLEHPFLQGFDSESEIESSRMKTVNSSPRCVLDQSFWDSMEDSKTPLKVTHQASLEDCPAERIRSLAGNLSSDWDLEGDDGDWILIRNNGVGGGSHGNGSVSSDFSATVEEEEELEILNLEFEENSVLFCSYDDDSGIMNNGRGGLEMEIGRFGGKNCNCSSLMQFDLLFPQDLHLLLFHCLKIHGFDQRKSVFKPIPTDHTKL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5372008 5373375 - Carg12831-RA Car09g00877 154614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00877 455 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Car09g00877 455 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00877 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Car09g00877 455 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00274 Car-Chr7:1447122 Car09g00877 Car-Chr9:5372008 6.52E-99 dispersed
Car09g00877 Car-Chr9:5372008 Car11g01503 Car-Chr11:12119711 8.21E-103 dispersed
Car01g00992 Car-Chr1:9411627 Car09g00877 Car-Chr9:5372008 0 wgd
Car02g00150 Car-Chr2:851898 Car09g00877 Car-Chr9:5372008 2.01E-100 wgd
Car20g00544 Car-Chr20:2991302 Car09g00877 Car-Chr9:5372008 8.45E-101 wgd
Car03g00496 Car-Chr3:5114316 Car09g00877 Car-Chr9:5372008 7.18E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89101 PF00069 Pkinase 1.70E-52 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00877 K20716 - bhj:120084748 659.062