Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00888 ATGTCTGACCTAGACCGTCAAATTGAGCAGTTGAAGAATTGCGAGCCGCTGAAGGAGTCTGAAGTTAAAGCTCTTTGCCTCAAGGCTATGGAAATCCTCGTCGAAGAGAGTAACGTTCAGAGAGTTGATGCCCCCGTTACCATATGTGGAGACATCCATGGGCAGTTTTATGACATGAAAGAGCTTTTTAAAGTAGGAGGCGATTGTCCAAAGACGAACTACTTATTTCTTGGCGATTTTGTTGACAGAGGATTTTACTCAGTTGAGACATTTCTACTTCTACTTGCTCTTAAGGTGAGATATCCAGATCGGATAACTCTCATCAGGGGGAACCATGAAAGCCGTCAAATCACACAGGTTTACGGATTTTATGACGAGTGCCTTCGCAAATATGGCTCTGTGAATGTTTGGAGATACTGTACCGATATTTTTGATTACTTGAGTCTCTCGGCTCTTATTGAAAACAAGATATTTAGCGTCCATGGTGGTCTCTCTCCTGCCATAACAACACTAGATCAGATTAGAATAATTGATCGAAAGCAAGAAGTACCTCATGACGGTGCCATGTGTGACCTACTGTGGTCTGATCCTGAAGACATTGTAGATGGTTGGGGTTTGAGTCCTCGAGGTGCCGGTTTCCTGTTTGGTGGCAGCGTAGTTACTTCTTTTAACCACACGAATAACATTGATTATATTTGTCGAGCTCATCAGTTGGTAATGGAAGGATACAAATGGATGTTTAATAATCAGATAGTTACAGTCTGGTCAGCTCCTAATTATTGTTACAGATGTGGTAATGTAGCTGCTATACTTCAACTGGATGAGAACCTTAATAAACAGTTTTGTGTCTTCGATGCTGCTCCACAGGATTCAAGAGGAAATCCAGCCAAGAAACCCGCTCCAGATTACTTCCTCTGA 918 42.27 MSDLDRQIEQLKNCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAITTLDQIRIIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHTNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILQLDENLNKQFCVFDAAPQDSRGNPAKKPAPDYFL 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5451524 5457504 - Carg12842-RA Car09g00888 154625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00888 305 Gene3D - 1 305 IPR029052 -
Car09g00888 305 SUPERFAMILY Metallo-dependent phosphatases 2 291 IPR029052 -
Car09g00888 305 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP-X ISOZYME 1 1 305 - -
Car09g00888 305 ProSitePatterns Serine/threonine specific protein phosphatases signature. 108 113 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 45 72 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 74 101 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 107 131 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 142 168 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 171 198 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 228 248 IPR006186 GO:0016787
Car09g00888 305 PRINTS Serine/threonine phosphatase family signature 250 266 IPR006186 GO:0016787
Car09g00888 305 CDD MPP_PP2A_PP4_PP6 3 288 - -
Car09g00888 305 Pfam Calcineurin-like phosphoesterase 45 237 IPR004843 GO:0016787
Car09g00888 305 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 305 - -
Car09g00888 305 SMART pp2a_7 17 288 IPR006186 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00888 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] - csv:101220629 634.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00981 Car09g00888 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01361 Car-Chr4:7894960 Car09g00888 Car-Chr9:5451524 2.43E-138 dispersed
Car09g00888 Car-Chr9:5451524 Car12g00676 Car-Chr12:4657376 3.15E-154 dispersed
Car15g00122 Car-Chr15:696271 Car09g00888 Car-Chr9:5451524 3.55E-96 dispersed
Car01g00981 Car-Chr1:9328367 Car09g00888 Car-Chr9:5451524 1.14E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g582 Blo03g00539 Blo03g01461 Bda07g00380 Bda09g00410 . Bpe08g01110 . . . . . Cma09g00974 Car01g00981 Car09g00888 Sed07g2701 . Cpe02g00791 Bhi09g01699 Tan01g3130 Cmetu10g1344 . Hepe01g1246 Mch11g1219 . . . . . . . . Cone6ag0042 Cone9ag0048 . . Lsi02g01878 Csa07g01012 . . . . . . . . Bma07g01282 Bma14g00321 . Cmo01g01157 Cmo09g00973 . . . . . . . . . . . . . Cla09g01035 Cam09g1091 Cec09g1090 Cco09g1111 . . Cre09g1056 . . Chy01g01058 Cme01g00995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007409 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 0 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00888 Car_Chr09 FPKM 9.088083 11.185395 13.067171 14.780066 10.87362 10.555235 9.761318 15.206429 15.880803 17.179007