Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00896 ATGGCTTCAGACCGGAACCATGGCGATCTCGAATCGACATTGCACGCTCTCGGACCGGACAACCCGTTCCCTCAAAGCCTCACCTTCCATCTCTCTCAGTCCACTTCTTTCTGCCATGTCGAAACCGAAAACTCCATGAAAGTAGACATTTCCAGGGACAACAGTCCTTACTTCTCTCGCTTTCTCACAGCTTTGAGCTGCCACAGCTCCATCAGAAGCTTGGAGTTTCATCATGTTGAATGGGAACTCGAGCAGATGCGAGAGCTTTGTAGGTTGGTTGAGGATAATCCGGGCGTTGGACATGTCGTGTTTCGACGAAATAGATTGAGTAATGAATGCTTGGCAGAGCTGTGTTGTGTTTTGAGAATTAACAGAGGGATTAAAGAGCTTACGTTTTCGGAATGTGGGATTGGATCGGTCGGGGTTGGTTTGATTGCTTCTGGTTTGAAGGTTAATGATTCGTTAGAGGAGTTTCAGGTTCGGGAGGACTCGATCGGGTCAAAAGGCGTGGAAGAACTCTCGAAGATGGTTGAAGAAAACTCGACTCTGAAGCTGTTGTCAATTTTCGACACGAACTCAATCACAGTGACTCCATTGATAGCTGCAGTTTTGGCAATGAATAGGAACTTGGAAGTGCACATTTGGAGTGGAAAAAGTTCAAAGGTGGTTGAGTTTGTACCTGGGAGTAGCACACTCAGAATTTACAGGCTAGACATGAATGGCGCTCGCACGGTTGCCTGCTCGCTCGGGTTGAACTCGACAGTTAAAACGCTCGACATGACTGGTATCCAGCTGAAATCTCGATGGGCAAGAGAATTCCGTTGGGTGTTGGAGCAAAATCGTTGCTTGAGGGAGGTAAAACTATCGAAAACTCACTTAAAAGACGAGGCAATCGTGCATATAGCAGCTGGACTTTTCAAGAACAAGCACTTGCAGAGCTTGTTTCTTGATGGAAACTTATTTACGGGCATCGGAGTTGAGCATTTACTCTGTCCTTTGAGCCGGTTTTCGACCCTGCAACTGCAAGCAAACATAACTCTCAGATACGTAACGTTCGGAGGTCGAAGAAACAAGATAGGTAGAGACGGGCTAGCAGCTATTCTACATATGCTCACAACGAACGAAACGCTTACTCATCTAGGGATATATGATGATCATAGCTTGAAACCAAATGACATAGTGAGAATATTCAGGAGTTTAGAGAAGAACGCATCGTTGAGACACTTATCGTTACCCGGCTGTAAAGGTGTTGATGGAGACATGGTGTTGCAGACAATAACAGGGATGCTGGAGGTAAATCCTTGGATCGAAGACATCGACCTCTCGGGAACTCCTCTCCAGAATTCCGGGAAAGCCAATGGAGTTTACCAAAGGTTAGGACAGAACAGGAACACTGATCTCGAACCTCCGGTGGATTCGCTCGACACGACCTTGACCGAGCCAAAAAGTTGTAGGATTTTCCTCTGTGGGCAAGAATATGCAGGTAAAACTTCCATATTGCAGAACTTTGGTTCTTCAAAACTTCCCTTCACAGAACAATTTAGATCTTTAGTAGCTCCAGTTGAACAAGCAGTAAGAACAGTTGGAATGAAGATAAAAACTTACAGAGACGAAGACGTAAAAACATCGGTTTGGAATCTAGCTAATCAGCACGAGTTCTATTCGCTCCACGATCTCATGTTTCCCGGGCCTGGAACTGCATCGGTATTTGTGATCATCAGCAGTTTATTCAGAAAACCAAGTAACAAAGACCCGAAAAACCTGAACGAGATAGAAGACGATGTTCGATATTGGCTACGGTTCATAGTTTCCAACTCTAAACGAGCATCACAGCAATGCGTGCTTCCAAACGTAACTTTGGTTCTCACACATCACGACAAAGTCGTACAACGTTCACAGAACGTGCAGCAAACTTTGATGTCAATCCAGAGATTGAGAGACAAGTTCCAAGGCTTCCTTGACATATACCCGAAAGTGTTTACTATCGATGCACGCTCATCGGCATCGGTAAACGAACTCTTGGATCATCTTCAGAGAACGAGCCGCACTGTTCTCCAAAGAGTTCCACGAGTTTACCAGCTCTGTAACGAACTGATCCAAATTTTGATGGACTGGAGATCAGAAAACTACAACAAACCAGTAATGAGATGGAACGAGTATCAGGATCTATGTCAAGTTCGTATCCCTCAGTTGAGAATACGTTCGAGACGAAGTAATCGAGACAAGATCGAGACAAGGAGGACAGCTCTTGCTACTTGCTTGCACGACATAGGAGAGGTGATTTACTTCGAAGAACTCGGATTTATGATATTAGATTATGATTGGTTTTGTGAAGTTCTTGGCCAACTAATAAGACTAGAAGTTAGAAACCATTCAACCAACAATAATGGATTCATCAGTAGAAAAGAACTCGAAAAAGTTTTAAAAAGCAAGTTACATAGCCCGATCCCAGGAACGAATTCGAAGGTATTTGAAAACGTGCAAGCTAGTGATCTAGTGGGAATGATGCTAAAACTCGAACTCTGTTACGAACAAGACCAATCAGATCCGAATTCGTCATTGCTAATCCCCTCGGTTCTCGAAGATGGTAGAGGAAAACCACAAAGGCAAGAATCCCCTAGTTCTATCTCTCTCTCTCTCTCGCTTTCTCTAATGGAACATCGTGAGTTTCGGTTTCCTAATCAGATTTTTCGCTGTTCGAAATTCAGGGTAGAGCTCGGAGGACAGTTCGGCTACTATATCGATGTCCTGGCATGCTCCACGAAGAGCTTGACCGAGACTCTTGGATTTATCCAGCAGCTTATAATCCCTGCTATTCATGACCTCTGTAATGGCGTCATCTTGACCGAAAGCATTATCAGGCCCGAATGTGTGCAAAATTTGGTGGCACCTAGACACAGGAAAACACAGAACGTCTCAATACAACAACTGAAACTCGCGTTGCTTTCCGTTCCTGCTGATGGAATGTATGAATATCAGCACACATGGTGTCCTGTGTCAGACGGCGGTAGAGAAATTGTTGCAGTTGGGTTTGATTTTGCTCGAGAGCTATTGTCTGACGATGATTTCCGGGAAGTTTTGCATAGGAGGTACCATGACCTTCATGATCTTGCTGTTGAACTGCAAATCCCGCACGAAAACAATCCGGAAGCAGTTGATCGCTCGTTATCCAATGACGAAACTGACAAAGTTGCAGCAACGTTCGATGGGATTGCAAAAGGGGTTGAAGCTGTTCTGCAGAGATTAAAGATCATTGAACAAGAAATCAGAGACTTAAAGCAGGAGATAAAAGGTTTAAGATATTATGAACACAAACTCCTACTCGAGCTTAATCGTAAAGTGAACTACCTAGTGAATTACAATGTCGAAATCGAAGAGAGAAGAGTACCAAACATGTTCTATTTCGTTAGAACGGAAAACTACTCAAGAAGGTTGATTACTAACCTGATTTCCGGAATGAATGCTCTCCGACTGCACATGTTATGCGAGTTCCGAAGGGAAATGCACGTCGTTGAAGATCAGATAGGTTGTGAAGTCCTGCAGATTGACAATATGGCAGTCAGGTCTTTAGCTCCATATACGACGAAGTTCATGAAACTGGTAACGTTTTCTCTCAGAATTGGAGCCCAAGTAGCTATGGGAATGGGGCACATGATCCCAGATTTGGGTCGGGAGGTTGCGCATCTAGCTGATTCGTCGTTCTTCCATGGGGCAGCTGGAGCAGCTGCTGCAGGAGCAGTCGGGGCTGTAGCTATCGGACGTGTAGGTAGTAGGGGAAAAAGCAGAGCTGGGGACATTCAGCAAGATCTCAGGACAGCTCAACAATGGGTTGTGGATTACTTGAGAGAACAGAGTTGTTCAAGTGGAAAAGATATTGCTGAGAAGTTTGGGCTGTGGAGAGTAAGATACAGGGATGATGGTCACGTTGCATGGATCTGCAGAAGACACATGAACCTTAGAGCACATGAAATAATTGAAGTTCCCATTTGA 3990 44.56 MASDRNHGDLESTLHALGPDNPFPQSLTFHLSQSTSFCHVETENSMKVDISRDNSPYFSRFLTALSCHSSIRSLEFHHVEWELEQMRELCRLVEDNPGVGHVVFRRNRLSNECLAELCCVLRINRGIKELTFSECGIGSVGVGLIASGLKVNDSLEEFQVREDSIGSKGVEELSKMVEENSTLKLLSIFDTNSITVTPLIAAVLAMNRNLEVHIWSGKSSKVVEFVPGSSTLRIYRLDMNGARTVACSLGLNSTVKTLDMTGIQLKSRWAREFRWVLEQNRCLREVKLSKTHLKDEAIVHIAAGLFKNKHLQSLFLDGNLFTGIGVEHLLCPLSRFSTLQLQANITLRYVTFGGRRNKIGRDGLAAILHMLTTNETLTHLGIYDDHSLKPNDIVRIFRSLEKNASLRHLSLPGCKGVDGDMVLQTITGMLEVNPWIEDIDLSGTPLQNSGKANGVYQRLGQNRNTDLEPPVDSLDTTLTEPKSCRIFLCGQEYAGKTSILQNFGSSKLPFTEQFRSLVAPVEQAVRTVGMKIKTYRDEDVKTSVWNLANQHEFYSLHDLMFPGPGTASVFVIISSLFRKPSNKDPKNLNEIEDDVRYWLRFIVSNSKRASQQCVLPNVTLVLTHHDKVVQRSQNVQQTLMSIQRLRDKFQGFLDIYPKVFTIDARSSASVNELLDHLQRTSRTVLQRVPRVYQLCNELIQILMDWRSENYNKPVMRWNEYQDLCQVRIPQLRIRSRRSNRDKIETRRTALATCLHDIGEVIYFEELGFMILDYDWFCEVLGQLIRLEVRNHSTNNNGFISRKELEKVLKSKLHSPIPGTNSKVFENVQASDLVGMMLKLELCYEQDQSDPNSSLLIPSVLEDGRGKPQRQESPSSISLSLSLSLMEHREFRFPNQIFRCSKFRVELGGQFGYYIDVLACSTKSLTETLGFIQQLIIPAIHDLCNGVILTESIIRPECVQNLVAPRHRKTQNVSIQQLKLALLSVPADGMYEYQHTWCPVSDGGREIVAVGFDFARELLSDDDFREVLHRRYHDLHDLAVELQIPHENNPEAVDRSLSNDETDKVAATFDGIAKGVEAVLQRLKIIEQEIRDLKQEIKGLRYYEHKLLLELNRKVNYLVNYNVEIEERRVPNMFYFVRTENYSRRLITNLISGMNALRLHMLCEFRREMHVVEDQIGCEVLQIDNMAVRSLAPYTTKFMKLVTFSLRIGAQVAMGMGHMIPDLGREVAHLADSSFFHGAAGAAAAGAVGAVAIGRVGSRGKSRAGDIQQDLRTAQQWVVDYLREQSCSSGKDIAEKFGLWRVRYRDDGHVAWICRRHMNLRAHEIIEVPI 1329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5535318 5539514 - Carg12850-RA Car09g00896 154633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00896 1329 Coils Coil 1075 1102 - -
Car09g00896 1329 Pfam C-terminal of Roc, COR, domain 709 871 IPR032171 -
Car09g00896 1329 Pfam Ras of Complex, Roc, domain of DAPkinase 485 606 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00896 - - - csv:101215001 2207.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00970 Car09g00896 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00970 Car-Chr1:9250159 Car09g00896 Car-Chr9:5535318 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00896 Car_Chr09 FPKM 4.140262 4.011997 4.359273 4.343159 4.347468 4.056517 4.398458 5.928287 4.961877 4.971577