Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00899 ATGGGTTTCTTAGCTAACTTGTTCTTTCATGACCCTTCTTCTTCCTCTGTGAGCTCTGCTGCTCACTTTCTCCTTGAACCCATTTTAGCTCATGGCTTGTCTGGTTTGGCTCACTTGGTTTTGTTGCTTGTTCTGTTCGTCTCATGGGTTTGCTTTAAGTTGAAGGCAGGCTATGGGGGATGTCAAAGAGAGACGAGGTGTTTGTACCTTAAGGGAATGTTCATATGCTGCCTCGTTGTTTCTGTTTTCAACCTTGTTTTGTTTTCTCTTGGCTGCTTTTACTGGTATAGAAATGGATGGTCTGATGAAAATATGGTGACCCTTTTGGATTTTGGGTTGAAAGCACTTGCATGGAGCACGGTTTCCTTTTGTTTACATTCTCATGTTTCCAAAACTGGAAAGGCAAAGGTTGCTAGTCATTTGAGAGTCTGGTGGGTTTCTTACTTAGCTGTTTCTTGCTACTGCCTTGCTGTGGACTCTGTTCTTTATGGACAAACTCATTTCTTGTCCATTAGATACTTGGTTTCTGATGTTGTGTCGGTTGTCTCTGGTTTGTTGATCATATATGTTGGGTTCTTTGGGAAGAGTGTGAGTGAACAAGACCCTCTTGAAGAACACCTTTTAAATGGTGAAACTACTCTCAGTAATGGCATCGTCGATGGCGTCGTTGAGCTGAAGAACTTGAAAGGAGATGAAACTGTGACCCCTTATGAGACTGCTGGGATTTTCAGTATCCTTTCATTCTCTTGGATGGGTGCTTTGATTGCAGCTGGAAATAAGAAGGCATTAGACCTTGAGGATATTCCTCAACTTGCAAGCCGTGATGCTGTTTCTCGGACCTTTCATATTCTCAGAAACAAGCTTGAGTTGGAGTGTGGAACAGTTAACAGAGTCACCACTTTTTCTATGGTCAAGGGTTTACTCTACTCAGCTTGGAAAGAAATAGCCTTAACTGCTGCTCTTGCATTCATTTATGCATTGGCTACTTATGTTGGCCCCTATCTTATAGACACTTTTGTTCAATATCTCAACGGTCAGCGAGATTTCGAAAGTGAGGGCTATGTTTTGGTCTGTGTTTTTTTCGTAGCGAAACTCGTGGAGTGTCTCGCAAAGAGGAATTGGTTCTTTAGGGTACAACAAGTCGGAATAAGGATTCGAGCAGCATTGGTTGCAATGATCTACAACAAGGGTCTGACTCTTTCTTGCCAGTCGAGGCAACAGCATACAAGCGGAGAGATTATCAACTTCATGACCGTAGATGCCGAGCGGGTCGTTGATTTCAGTTGGTATATACACGATGTTTGGCTGGTGGTTTTGCAAGTTGGATTGGCCTTGTTGGTTTTGTATAAGAAACTTGGTCTTGCTTCAATTTCAGCTTTTGTTGCAACTATAGCTGTTATGTTGATAAATATCCCATTGGGAAAGTTGCAGGAGAAGTTTCAGGACAAGATAATGGAGTCAAAAGACAAAAGGATGAAGGCTACATCTGAAATCTTGAGAAATATGAGGATTCTTAAGCTTCAGGGATGGGAGATGAAGTTCCTATCTAAGATATCCGAACTTCGGAACATCGAGGCGGGATGGTTAAAGAAGTTCCTTTATACATTGTCAGCTACGACGTTTGTCTTTTGGGGTGCACCAACGTTTGTGTCTGTGGTAACTTTTGGGACATGTACGCTTGTGGGGATCCCATTAGATTCTGGCAAAGTATTATCTGCGCTTGCAACGTTTAGGATTCTTCAAGAACCAATCTACGGTCTTCCTGACACGATCTCAATGGTTGTTCAAACAAAAGTTTCGCTTGATAGAATAGTGTCGTTCCTTCGTCTTGACGACTTGCAGTCTGATATTATAGAGAGGCTTCCAAGGGGGAGTTCTACTACAGCAGTTGAGATTATCAATGGGAACTTTTCTTGGGATGATTCGAGTTCTTCGAACCTGACGTTGCAAGATATCAATGTCAAAGTGGAACATGGCATGAGAGTAGCTGTTTGTGGTACGGTTGGGTCGGGCAAGTCCAGCTTGCTATCTTGCATCCTGGGAGAGGTACCTAAACTATCAGGGAACCTGAGGGTGTGTGGTAGTAAGGCTTATGTAGCTCAGTCGCCATGGATACAGAGTGGAAAGATCGAGGAGAATATACTTTTTAGCAAAGAAATGGACAGAGAAAGGTACAAAAGAGTTCTTGAAGCATGTTGTCTAGAAAAGGACCTTGAAATTCTTGCATTCGGCGACCAGACGGTAATAGGAGAAAGAGGAATCAATTTAAGTGGTGGACAGAAGCAAAGAGTTCAAATTGCTCGAGCCTTGTACCAAGATGCTGATATTTACTTGTTTGATGATCCCTTTAGTGCAGTTGATGCTCACACAGGTTCTCATCTCTTCAAGGAATGTCTCCTTGGTGTTCTGAATTCAAAAACAGTCATTTATGTCACTCATCAAGTAGAATTTTTACCAGCAGCAGATCTTATCTTGGTCATGAAAGATGGAAAAATTGTTCAATCTGGAAAGTACGATGAAATTCTTCGTTCTGGAACCGACTTTATGACACTCGTTGGCGCACACGAGGAAGCATTATCCACCATTAATTCTGTGGAAGGAGATGCTTCTGGAAAATCTGCAAGCAAAGAAGATGGGTCTATGAGTAATACTAATGGCATTACATATGAGGAAGATAAAACAGATACACAAGATGGGAAGGGAGTTGATGAAACTAAGTCAAAAGGGCAGCTTGTACAAGAAGAAGAAAGAGAGAAAGGAAAAGTTGGATTTTCAGTGTACTGGAAATATACCAAGTATGCTTATGGTGGAGCTCTTGTGCCTATTATATTGCTTGCTCAGGTTCTCTTTCAGATTCTCCAAATTGGAAGTAATTACTGGATGGCATGGGCTACTCCTGTTTCAGATGATATGGAGCCTCCTGTTTCGACCTCTCGATTGATTATCGTCTATGTTGCTTTGGCCATTGGAAGCTCTTTGTATGTCTTCTTGAGATCAGCCCTTCTTGTGACGGCTGGTTTTAAAGCAGCAACTGAACTCTTCGTTAAAATGCACACGAGCATCTTTCGGGCTCCCATGTCGTTCTTCGATTCTACTCCGAGTGGAAGAATCCTCAATAGAGCCTCCACAGACCAAAGTGCCATTGATATGGATATACCATTTCGAGTTGGGGCCTTCTGCTTCAGTCTGATTCAAATCCTAGGAACCATTGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTATCTTTATCCCTGTGATGGCTTTATGCATCTGGTACGAGCAATATTATATTCCATCAGCACGAGAGCTATCCCGGTTGATTGGAGTATGCAAAGCTCCAGGGATTCAACTGTTCTCCGAAACGATTTCTGGATCAACAACTATTAGAAGCTTTGATCAAGAGTCAAGATTCCAGGACACCAATATGAAACTGACAGATGCATACTCTCGACCCAAGTTCCACACAGCTGCAGCAATGGAATGGCTCTGCTTCCGTCTCGATTTATTGTCTTCGATCACATTCGCCTCGTCTTTGATTTTCTTGGTATCTATCCCTGTGGGAGTCATTGATCCAGGCATTGCTGGCTTGTGTGTAACCTATGGACTTAACCTCAATATGTTGCAAGCTTCGCTAATATGGAACCTTTGCAATATGGAGAACAAAATTATATCAGTGGAGAGAATATTTCAATATACTTCAATCCCTAGTGAGCCACCTCTAGTTATCGAGGAAAACCGACCAGATAGTAGCTGGCCAGCGTTCGGAGAAGTTGAACTTCACAACCTGCAGGTTCGCTATGCACCTCAGCTACCTCTTGTGTTGCAAGGTATTACATGCACTTTTCCAGGAGGAAAGAAAACAGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAGACACTTTTTCGGATAGTCGATCCCGTAGCAGGTCATATTGTGATAGATAACGTCAACATAACAACGATAGGACTTCATGATTTGCGGTCAAAACTCAGTATCATCCCTCAGGATCCTACTATGTTTGAAGGCACTGTGCGGAGCAATCTCGATCCCCTTGAAGAATATGCAGATGAAGACATTTGGGAGGCACTGGATAAATGCCTACTTGGAGATGAAGTGAGAAAAAAGGAAGGAAAGCTGGATTCAGCAGTTAGTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTAGTTTGCCTTGGTCGAGTGCTACTCAAGAAGAGTAAGGTGTTGGTCCTTGATGAAGCTACTGCATCGGTCGATACAGCTACGGATAACTTGATTCAACAGACTCTACGACAACATTTTTCCGACTGTACTGTCATTACCATTGCACATCGAATAACCTCAGTCCTTGACAGTGACATGGTCTTGCTTCTAAGTCAAGGACTCATTGAGGAGTATGACACCCCCACAAGATTGCTAGAAGATAAGTCATCCTCGTTTTCTCAACTTGTTGCAGAGTACACGCAAAGATCGGGTTCTCAGTGA 4509 42.76 MGFLANLFFHDPSSSSVSSAAHFLLEPILAHGLSGLAHLVLLLVLFVSWVCFKLKAGYGGCQRETRCLYLKGMFICCLVVSVFNLVLFSLGCFYWYRNGWSDENMVTLLDFGLKALAWSTVSFCLHSHVSKTGKAKVASHLRVWWVSYLAVSCYCLAVDSVLYGQTHFLSIRYLVSDVVSVVSGLLIIYVGFFGKSVSEQDPLEEHLLNGETTLSNGIVDGVVELKNLKGDETVTPYETAGIFSILSFSWMGALIAAGNKKALDLEDIPQLASRDAVSRTFHILRNKLELECGTVNRVTTFSMVKGLLYSAWKEIALTAALAFIYALATYVGPYLIDTFVQYLNGQRDFESEGYVLVCVFFVAKLVECLAKRNWFFRVQQVGIRIRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVVDFSWYIHDVWLVVLQVGLALLVLYKKLGLASISAFVATIAVMLINIPLGKLQEKFQDKIMESKDKRMKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSATTFVFWGAPTFVSVVTFGTCTLVGIPLDSGKVLSALATFRILQEPIYGLPDTISMVVQTKVSLDRIVSFLRLDDLQSDIIERLPRGSSTTAVEIINGNFSWDDSSSSNLTLQDINVKVEHGMRVAVCGTVGSGKSSLLSCILGEVPKLSGNLRVCGSKAYVAQSPWIQSGKIEENILFSKEMDRERYKRVLEACCLEKDLEILAFGDQTVIGERGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLNSKTVIYVTHQVEFLPAADLILVMKDGKIVQSGKYDEILRSGTDFMTLVGAHEEALSTINSVEGDASGKSASKEDGSMSNTNGITYEEDKTDTQDGKGVDETKSKGQLVQEEEREKGKVGFSVYWKYTKYAYGGALVPIILLAQVLFQILQIGSNYWMAWATPVSDDMEPPVSTSRLIIVYVALAIGSSLYVFLRSALLVTAGFKAATELFVKMHTSIFRAPMSFFDSTPSGRILNRASTDQSAIDMDIPFRVGAFCFSLIQILGTIAVMSQVAWQVFIIFIPVMALCIWYEQYYIPSARELSRLIGVCKAPGIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLVSIPVGVIDPGIAGLCVTYGLNLNMLQASLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDSSWPAFGEVELHNLQVRYAPQLPLVLQGITCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNVNITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCLLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTRLLEDKSSSFSQLVAEYTQRSGSQ 1502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5557404 5563703 + Carg12853-RA Car09g00899 154636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00899 1502 Pfam ABC transporter 1276 1424 IPR003439 GO:0005524
Car09g00899 1502 Pfam ABC transporter 649 783 IPR003439 GO:0005524
Car09g00899 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car09g00899 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car09g00899 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1493 IPR003439 GO:0005524
Car09g00899 1502 MobiDBLite consensus disorder prediction 891 914 - -
Car09g00899 1502 MobiDBLite consensus disorder prediction 866 914 - -
Car09g00899 1502 SMART AAA_5 658 831 IPR003593 -
Car09g00899 1502 SMART AAA_5 1285 1478 IPR003593 -
Car09g00899 1502 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Car09g00899 1502 MobiDBLite consensus disorder prediction 866 890 - -
Car09g00899 1502 Pfam ABC transporter transmembrane region 942 1184 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car09g00899 1502 Pfam ABC transporter transmembrane region 321 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car09g00899 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 854 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00899 - - K05666 csv:101213946 2543.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01826 Car-Chr4:10581713 Car09g00899 Car-Chr9:5557404 2.35E-14 dispersed
Car08g00040 Car-Chr8:187564 Car09g00899 Car-Chr9:5557404 0 dispersed
Car09g00899 Car-Chr9:5557404 Car17g01264 Car-Chr17:9602120 0 dispersed
Car14g00817 Car-Chr14:4800819 Car09g00899 Car-Chr9:5557404 1.41E-96 dispersed
Car01g00164 Car-Chr1:843641 Car09g00899 Car-Chr9:5557404 1.92E-14 transposed
Car01g00967 Car-Chr1:9228645 Car09g00899 Car-Chr9:5557404 2.12E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g631 . . . . . Bpe08g01103 . . . . . . . Car09g00899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00899 Car_Chr09 FPKM 21.015371 22.272449 28.865999 28.508186 26.168644 24.486515 28.640863 32.469303 34.165131 33.817776