Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00916 ATGGGTAGCCAAGAAGTGAGACAGCCAATGTTACCAACATCATCTAATACCTTCGTAACAAGGTCAATAGATATTCCGAGAAGCAAAAGACGATTGAGGCGCACGAAGAGTGCTCCTCATTCGGATTCTCCTCATACAGAGACCACTGGCACCGTTACTGGTCTAGTTCCACGTTCAGGATTAGTTTTCGGAAATCTACACCCGAGTTTTATAAGAGTAGCCTTAGTTTTAATAATGTACTTGGGTATAGGAACTCTATGTTTCTACCTTGTCAGGCACCAAATCAAAGGGGGAAAAACCAACGGAGTAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACCGTTGGATATGGTGATCTTGTCCCAAACACTCCTTCCACCAAGCTACTAGCTTGTGCTTTTGTCTTCACAGGAATGGCCGTAGTTGGCCTAATATTAACCAATGCAGCTGATTATTTGGTAGAGAAGCAGGAAATCTTTCTATTTAAGGTCTTCCATATGCACCAAAATGGTTCTTGCGACATTACAGAAGAAATTGATACTAATAAAGCTAGAAATAAGTGTATAGTGGTGTTTCTTTTTCTTCTTTTGTTCATAATTTTTGGGACTGTATTTCTAGTTACCCTTGAGGAGTTGGATTTTATTGATGCCTTTTATTGTGTATGTTCTACCATTACTACATTAGGCTATGGAGATAAAAGCTTCTCGACCCGGTGGGGGCGTCTATTCGCCATTTTCTGGATCTTGATAAGTTCCATCACTCTGGCTCAGTTTTTCCTTTATATTGCTGTGCTAAACACTGAGAGAAGGAAAAAATCTCTGGTGAAGTGGGTTCTAAGTAAAAAGGTGACGGTCTTGGACCTCGAGGCTGCGGATCTCGATGATGATGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTCAAGGAGATGGGGAAAATCACTGAAGATGACATTTCACCTGTTCTGGACGAGTTTGAGAATCTTGATGTTGATCAATCAGGAACATTGTCCATATCTGATATAACACTTGCTCAATCATCTTAA 1056 40.81 MGSQEVRQPMLPTSSNTFVTRSIDIPRSKRRLRRTKSAPHSDSPHTETTGTVTGLVPRSGLVFGNLHPSFIRVALVLIMYLGIGTLCFYLVRHQIKGGKTNGVVDAIYFTIVTMTTVGYGDLVPNTPSTKLLACAFVFTGMAVVGLILTNAADYLVEKQEIFLFKVFHMHQNGSCDITEEIDTNKARNKCIVVFLFLLLFIIFGTVFLVTLEELDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISSITLAQFFLYIAVLNTERRKKSLVKWVLSKKVTVLDLEAADLDDDGVVGAAEFVIYKLKEMGKITEDDISPVLDEFENLDVDQSGTLSISDITLAQSS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5642024 5643487 + Carg12871-RA Car09g00916 154653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00916 351 MobiDBLite consensus disorder prediction 29 52 - -
Car09g00916 351 Pfam Ion channel 196 265 IPR013099 -
Car09g00916 351 Pfam Ion channel 76 156 IPR013099 -
Car09g00916 351 ProSitePatterns EF-hand calcium-binding domain. 294 306 IPR018247 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00954 Car09g00916 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00916 Car-Chr9:5642024 Car18g00550 Car-Chr18:5182713 3.56E-118 dispersed
Car01g00954 Car-Chr1:9161999 Car09g00916 Car-Chr9:5642024 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00916 K05389 - csv:101216032 561.607