Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00917 ATGGCGCCTGGGACTGTGACTGCTCGAGCCACAGGCGCCATTATTGCCGCCATCTCTGTTTCTATGGTCCTCTTCTCTTACCTTCTTCGCAAACACCATTCGAAGGATCATTCGAGGAAGAACACAAAATCCTTCTTTGTATCGAAGAAATGTCCAACAAATGGGCTCGTAGGTGCCATTGGCAATACCCCTTTGATACGGATTAATAGCCTCTCCGAGGCCACCGGTTGTGAGATTCTTGGGAAGTGCGAGTTCTTGAATCCGGGTGGAAGTGTGAAGGATAGAGTTGCGGTTAAGATCATTGAAGAGGCCTTAGAATCTGGTAAGCTAGTTGAGGGTGGTGTAGTAACAGAGGGAAGTGCTGGAAGCACTGCCATAAGTCTTGCCACAGTTGCTCCTGCTTATGGTTGCAAGTGCCATGTGGTTATTCCAGATGATGCTGCTATTGAAAAATCTCAAATACTTGAAGCGCTTGGAGCTCATGTTGAAAGGGTAAGACCAGTGTCAATTACGCACAGAGATCACTTTGTTAACATTGCTAGGAGGAGAGCTGCGGAAGCCAATGAGCTAGCTTTGAAGAACAAAAAAGAAGAGCAACTATTTGTGGGAGACAAGGAACAAATTAATGGTCACATTTATGAGGGAGAAACCCAAGATTCCTCTTTCTCAAGTAATTGCAAGGGTGGTTTCTTTGCTGATCAATTCGAAAACTTGGCGAATTATCGAGCTCATTACGAGGGTACGGGACCAGAGATTTGGGAACAAACTGGTGGGTGTATAGATGCCTTCGTTGCAGCTGCAGGAACCGGTGGCACCGTGGCTGGTGTTTCCAATTTTCTCCAGGAGAAGAATCCAAATGTGAGGTGTTTCCTCATAGATCCTCCTGGCTCAGGCCTGTTCAACAAGGTGACTAGAGGAGTTATGTACACTAAAGAGGAGGCTGAAGGACGAAGATTAAAGAACCCTTTTGACACAATAACTGAAGGAATTGGAATCAATAGATTAACGCAGAATTTCTTGATGGCAAAACTTGACGGGGCATTTCGTGGAACAGACAGGGAAGCCGTTGAAATGTCAAGATATCTGTTGAAGAATGATGGGCTCTTTCTAGGGAGCTCTTCGGCCATGAATTGCGTTGGAGCTGTGAAAGTGGCACAGTCAATTGGCCCTGGCAACACTATTGTTACCATTCTTTGCGACAGTGGAATGAGGCATCTGAGCAAGTTTTTCAGTGCAGAGTATCTGAGTCAATACGACTTGACGCCCAAGGCTACTGGCTTAGAGTTTCTGGAATCCAGGTGA 1302 46.01 MAPGTVTARATGAIIAAISVSMVLFSYLLRKHHSKDHSRKNTKSFFVSKKCPTNGLVGAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGKLVEGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDAAIEKSQILEALGAHVERVRPVSITHRDHFVNIARRRAAEANELALKNKKEEQLFVGDKEQINGHIYEGETQDSSFSSNCKGGFFADQFENLANYRAHYEGTGPEIWEQTGGCIDAFVAAAGTGGTVAGVSNFLQEKNPNVRCFLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDREAVEMSRYLLKNDGLFLGSSSAMNCVGAVKVAQSIGPGNTIVTILCDSGMRHLSKFFSAEYLSQYDLTPKATGLEFLESR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5644294 5647141 + Carg12872-RA Car09g00917 154654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00917 433 Pfam Pyridoxal-phosphate dependent enzyme 58 400 IPR001926 -
Car09g00917 433 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 82 100 IPR001216 GO:0006535
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00917 K01738 cysK; cysteine synthase [EC:2.5.1.47] - csv:101216270 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00917 Car-Chr9:5644294 Car12g00831 Car-Chr12:7976603 1.72E-31 dispersed
Car09g00917 Car-Chr9:5644294 Car12g01076 Car-Chr12:10542771 7.75E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g655 . . Bda07g00407 . . . . . . . . . . Car09g00917 Sed07g2745 Cpe06g00815 . Bhi09g01756 Tan01g3186 Cmetu01g2159 . . Mch11g1263 . . . . . . . . Cone6ag0011 Cone9ag0010 . . Lsi02g01839 . . . . . . . Bpe11g00584 . . Bma14g00686 . . Cmo09g01007 . . . . . . . . . . . . . Cla09g02067 Cam09g2156 Cec09g2221 . . . . . . Chy01g01152 Cme01g00921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010367 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00917 Car_Chr09 FPKM 0.034364 0.0 0.327881 0.048804 0.0 0.149172 0.230121 0.513605 0.079799 0.168149