Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00929 ATGATTCATTCTGGTTTCTTCCTTTCGGGTCCATCGCTTAATTCTGATGCTACTACGTCTTTCATATCGATTCCGGTGTCTGGAGGCGATGGCGCTATGGCGTTGGATGCCATCTCCCCTTCTTTCTGGGTTAGAACAGCCATGAAAGTATCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTCCATTACCAAAATGGATCGAGATCTGATCTCGGGCCAAATCCTTTCGATTCGGGTTCGTGGATGGTGATGGAACTTGTAGCTCTGTTATTTCAGCTAATCATCTCAGTGATTACTCTTGCCATTTCACAGACTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGGTTCTCTATGGCCGCCATCGGAATCATTATCGAATCCAGGGAGATGGGAACAGTCTTTCGGATATCGAACACGAACAGCAGAGGAGTAATGAATCATCAAGGTACTTGCAGTTGATGAACAAATGTCGCACGTCTCTTGATCTTTTCTTCGCGATATGGTTCGTAATGGGCAATCTTTGGGTCCTCGATTCTCGCTTCGCCTCGTTCGAAAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGTCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTTTGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTGGACGATCAAATCTCCCAGCTACCTTACTGGAGATACCGAGCAGTCCACACCGACATCAACCCCGAAAGTCGACCCGATAACAGCAATACAGGACTTCCAAAAGACGACCCAGAATGTTGCATTTGCCTTGCAAAGTACATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTGCATCTTCATGCCCTCTCTGTTTGATCTGGACTGACACGGTTGAGAAGCTCGGGCGGGTGGATTTCGAGTCGTTTTCAATGATCAATTCTGGTTATTTCATTTCGGGGCCTTCGTGTAACTACAATGGCACTGCTTCCTTTATCTCGAATTTGTTGGTGGAAGAAGATGGTGCAGGTGCAGATGTTAGAGATGACAATTCTGTTTCTCTCCCTGCATCTTTCTGGGTTAGGGTAGCAATGAGGGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGAGTATTTCACTACCAGAATGGATCGAGGTCAGATCTCGGGTCCGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAACTGATAGCTATGGTGTTTCAGCTGGCCATCACTGTGTTCTTTCTCGTCATTTCAGAGACAGAGAAGCCTGTTTGGCCTATGAGACTGTGGATAGTTGGTTACGATCTTGGCTGCGTTCTTAGCTTGTTGCTTCTCTACGGACGATATTGGCACGTTTATTTAATGCCGCGCGTTGGCCTTCCCGACATCGAGCAGCGGAGGAGCAGTCAAGCATCAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCTTTTCCATTCATACTTTTTCTTCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTCTCGGGTATAACATTAACATGGCATCGACCGACAAAGGCGCATCGGATGATCAAATATCCGAGCTACCTTGCTGGAGATATAAAGCAAGCTCAAAACAACCTGATAGTAACAACAAAGGACTTCCAAAGGAGGATCCAGAATGTTGCATTTGCTTAGTGAAATACAGAGATGAAGAAGAAGTAAGAGAGTTGCCTTGTTCGCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTATCGATCACATCTTCCTGCCCTCTCTGTAAGCAACAACTTCAAAGATAA 1959 45.13 MIHSGFFLSGPSLNSDATTSFISIPVSGGDGAMALDAISPSFWVRTAMKVSRARWFIFLRRVFHYQNGSRSDLGPNPFDSGSWMVMELVALLFQLIISVITLAISQTERPVWPMRLWIGGYDLGCVLSLLVLYGRHRNHYRIQGDGNSLSDIEHEQQRSNESSRYLQLMNKCRTSLDLFFAIWFVMGNLWVLDSRFASFERAPKLHLLCSFLLVWNVICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPYWRYRAVHTDINPESRPDNSNTGLPKDDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAIASSCPLCLIWTDTVEKLGRVDFESFSMINSGYFISGPSCNYNGTASFISNLLVEEDGAGADVRDDNSVSLPASFWVRVAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELIAMVFQLAITVFFLVISETEKPVWPMRLWIVGYDLGCVLSLLLLYGRYWHVYLMPRVGLPDIEQRRSSQASRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISSLLGYNINMASTDKGASDDQISELPCWRYKASSKQPDSNNKGLPKEDPECCICLVKYRDEEEVRELPCSHLFHLKCVDKWLSITSSCPLCKQQLQR 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5723236 5729796 + Carg24745-RA Car09g00929 154666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00929 652 Pfam Ring finger domain 605 647 IPR001841 -
Car09g00929 652 Pfam Ring finger domain 293 334 IPR001841 -
Car09g00929 652 ProSiteProfiles Zinc finger RING-type profile. 606 647 IPR001841 -
Car09g00929 652 ProSiteProfiles Zinc finger RING-type profile. 294 334 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car09g00929 Car16g00969 CCT
Car01g00937 Car09g00929 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00592 Car-Chr5:3450397 Car09g00929 Car-Chr9:5723236 7.90E-08 dispersed
Car09g00929 Car-Chr9:5723236 Car12g00287 Car-Chr12:1879624 4.67E-32 dispersed
Car01g00937 Car-Chr1:9049200 Car09g00929 Car-Chr9:5723236 5.92E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00929 - - csv:101217150 593.193