Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00932 ATGGGAAAGAGAAGAGAGCGTCGCCGTGCAGCTCTCAGCAACGCCGGTCGCCGTGTCAAGCTTGATCTATTCGCCGAGCCCTCCGGAGATTTAGATGGCTCTGATGCACATGAAGAAGTTGGAGGGGATATAAATTCAAGACAGACAACCAAGTTACCTAAATCAGCATCCTCCTCAGGTGGGTTCTATCAGTGTTCTTCAAAAGGACTATGTAAAGGGGATATGAGTGCTTCACATTATAATGTCTATAGGGTGACTGTGGTCTTTGGGACACCAATAATCAGATCAGGTCAGGGAAAATTTTTCATCGGTTCGTATGTCTCTGTCTTTTCATTTTTGGTTATCACTGACATTTGTCCTTGGATGTGTAACAGGGAATTCTTTGACGTGCTGCTAAGAGATATGGTTTTGGATATATTTGATGTGAAAGTGTTTTTATTTTCAGGTCAACAAGCACAAAATCCCTTGCTGTTACTGGAGCAATATAGTGATGATGAAGTTGATGAGGAAGTGGATGAGGACTCGAATAAAAATTCAGATCATGATGGACAAGATGCGTTGTTACCTGACTGCAATGACGAGGTTGCTGCCCTTCCTGCTGAGGGATGTGAGAAAGTGGAGGCAAATGTCGGTGAAGACATCATTGCTGAAAAGGCTGTTCAAGAGGAACCCGAGCGAGGTTCTGCTGAATTTTCTGAGAACCTGGAGAGCAAAGATGAAGCAAAAACTGACACTAATAACTTTGGATATTTAAGCAAGGAAACTGATCTGGTTCAAACATCTGTACCAGCCACATCTACTGTACAAGCATCAGGGGATGTTATTTCAGGATGGAGGGTTGTCATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTTCCTGATGTCGTTTCGGCTCAGACTCAGCCTACTCTATCAGCCACCGACGTTATAACTTCTCCGACTCAATTTCCAGAGAACGTTACAGTATTTAAACAGGATTCTGGCTTATCTAATGGTGGGAGGTTAGATGCTTTTTCAGCAGAAAGCACAGGTTACAAGAACGGCGTTCCAGTTACTGCAAGTCAGGGTTCCGAGGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAATAATGTGAATATAGCAAAAGCTGCTTCTGAGATCTATGCTGATTACGCGGTGACTAATGAAGAACAGAAATCAGGGTTGGACCTTCCTTCACATCTTCTAAACTGGAGTTCGAGCTTGTTAGAGAGATTAAAATCATTACAGAAGTCTGGGGGTCATGAATGGACATTAAAGTACATATTGGAAACTCAGGTTAGACTTTCGGATTTGGAGTCGCTGATGCCGTATAAGGCATCGTTGCTTCCATTCTGGGAACACTTGGCAAGAAAACTTAAACAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGTAGTATCGTCGCAATTGGATGAAGCCAAGACTACTGATAGTCCAAACATTGTAAGAGACGAGAAATTTCAGGGAAGGTCGGATGTTGCATCGGATGTTGCGAGAATGGAAAATGGTGGTGTTTCTGCTTTGGAGCATTCACATTTGCCTACTGATTCTGCTTCTTTGACTATCATTGCAAATGGAGAAAATATTTCACCGTCTAAGGGGAACTCTACTAGTGTGATTGAGCATGCAAGTGAAATTGCAATTGATGAAATGGCTTCCAAGAGTGAACATTCTGTGGAAGATGTTGACATGGAGGTGGATATGGAAGTTGAAGATGCCGGTTTTGCAGGTAGCTTGACAGTGGCTGGTACACCAGATATGTACAATGCTAAGTCGTTTACTTCGTTCGAGCAACCACTTCAGCCAGATCAACAAGCCCAGCCAAATCTTTCTTCAGGCTTTGCATACATGGGGCACGAGGATGGCAGTGTAGCACCACCGCCACCACCAGCGGACGAAGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCTGATGAACCAGCTGAACCATTATATCCTATGCCTCCATCTTATACCCAACTTGGGCAGCCTGTTTGTTACACTGAACCATATCAAGTGTCTTATCCTGATTCTAGTATTCAGTATTATGCACATCCTGTCCCTGAAGTTGTACCTAGTGCAGATTTTTACGGACATCCAGAAACGTGTAACGTTGTATTGGCTCAAGCACCATTTTGCTATGAAGCAGTTCCCAATTCGCATACGGGTTCTGCTCCCCTAGTTGTAAATGGTGTTGTGCCTGAAGGTTATGGTATTCTTCAAAATGCAACGTCCTCTCTTCCCGTCTTTAGTACTGCTGGGTCGTCTCAGTTGCATGTTGATTCTGCATCTGTGAGTTTTGATCCTTCTTTCACTTTTCATTATGGATCTTCTGATACTGCAAGTATGAATACTGCTTCTGCCGCTGATGAAATTGACAAGGGGTGTGGAGACACGAAAGCCTCTGTCCGAGTATCTACTTCAGTCTCCCCAACTAATGATGTTCCGCCAACAAGTAATGCCGTTACTGATCCTTCGGCTGTTGCTAATACAACTGCAATTTCCAAGTGGAAAGCAGCGAAGGAAGAACTGGAAGAAGACGAGGAAGAACCAGAAAACGCTTACGAGATTCTCGAGAGGAAACGAGAAAGAGAAATAAAGGAATGGCATGCACAGCAAATTGCCAGTGGAGATGCAAAAGAAAACGCCAACTTTCAGCCTCTTGGCGGTGATTGGCGTGAGCGGGTAAAGCGAAGGAGAGCGCAATCATCGAGTGATGTTACTCAATCCCCTGCTGAAGCATCCACAGATGGAAACCAGCAGCAGCCCGACCTGGCAGAAATCGCAAAAGATCTCCCCTCAGGATGGCAGGCATATTGGGACGAGTCAACGAAGCAGGTGTATTATGGTAACGTTAACACCTCGGAAACATCGTGGACAAAACCGAGGAAGTGA 2985 44.36 MGKRRERRRAALSNAGRRVKLDLFAEPSGDLDGSDAHEEVGGDINSRQTTKLPKSASSSGGFYQCSSKGLCKGDMSASHYNVYRVTVVFGTPIIRSGQGKFFIGSYVSVFSFLVITDICPWMCNREFFDVLLRDMVLDIFDVKVFLFSGQQAQNPLLLLEQYSDDEVDEEVDEDSNKNSDHDGQDALLPDCNDEVAALPAEGCEKVEANVGEDIIAEKAVQEEPERGSAEFSENLESKDEAKTDTNNFGYLSKETDLVQTSVPATSTVQASGDVISGWRVVMHEESHNYYYWNVETGETSWEVPDVVSAQTQPTLSATDVITSPTQFPENVTVFKQDSGLSNGGRLDAFSAESTGYKNGVPVTASQGSEVDQSYAAFSTCSNNVNIAKAASEIYADYAVTNEEQKSGLDLPSHLLNWSSSLLERLKSLQKSGGHEWTLKYILETQVRLSDLESLMPYKASLLPFWEHLARKLKQIEDDINKEIYQTAVVSSQLDEAKTTDSPNIVRDEKFQGRSDVASDVARMENGGVSALEHSHLPTDSASLTIIANGENISPSKGNSTSVIEHASEIAIDEMASKSEHSVEDVDMEVDMEVEDAGFAGSLTVAGTPDMYNAKSFTSFEQPLQPDQQAQPNLSSGFAYMGHEDGSVAPPPPPADEEWIPPPPPDNEDVPPPPPDEPAEPLYPMPPSYTQLGQPVCYTEPYQVSYPDSSIQYYAHPVPEVVPSADFYGHPETCNVVLAQAPFCYEAVPNSHTGSAPLVVNGVVPEGYGILQNATSSLPVFSTAGSSQLHVDSASVSFDPSFTFHYGSSDTASMNTASAADEIDKGCGDTKASVRVSTSVSPTNDVPPTSNAVTDPSAVANTTAISKWKAAKEELEEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGGDWRERVKRRRAQSSSDVTQSPAEASTDGNQQQPDLAEIAKDLPSGWQAYWDESTKQVYYGNVNTSETSWTKPRK 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5734034 5742242 - Carg24742-RA Car09g00932 154669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00932 994 MobiDBLite consensus disorder prediction 903 960 - -
Car09g00932 994 Pfam WW domain 962 992 IPR001202 GO:0005515
Car09g00932 994 Pfam WW domain 276 304 IPR001202 GO:0005515
Car09g00932 994 MobiDBLite consensus disorder prediction 27 57 - -
Car09g00932 994 ProSitePatterns WW/rsp5/WWP domain signature. 278 304 IPR001202 GO:0005515
Car09g00932 994 MobiDBLite consensus disorder prediction 219 243 - -
Car09g00932 994 MobiDBLite consensus disorder prediction 167 188 - -
Car09g00932 994 Coils Coil 871 891 - -
Car09g00932 994 MobiDBLite consensus disorder prediction 933 953 - -
Car09g00932 994 ProSitePatterns WW/rsp5/WWP domain signature. 966 992 IPR001202 GO:0005515
Car09g00932 994 MobiDBLite consensus disorder prediction 646 680 - -
Car09g00932 994 MobiDBLite consensus disorder prediction 219 247 - -
Car09g00932 994 MobiDBLite consensus disorder prediction 174 188 - -
Car09g00932 994 MobiDBLite consensus disorder prediction 622 680 - -
Car09g00932 994 ProSiteProfiles WW/rsp5/WWP domain profile. 272 306 IPR001202 GO:0005515
Car09g00932 994 ProSiteProfiles WW/rsp5/WWP domain profile. 960 994 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00932 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1154.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00934 Car09g00932 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00934 Car-Chr1:9030428 Car09g00932 Car-Chr9:5734034 8.73E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00932 Car_Chr09 FPKM 10.228572 8.763217 6.75038 6.118922 4.951025 5.803362 4.477995 17.38456 16.593246 15.479334