Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00936 ATGGCTGCAATTCTAAGAAATCCCTTAATTCCTTCTCAATTCTTCGCCATAGCCTTGATTTTATCACTAAGTATCCGTCTCTTTCCATGTTGTTACTCCATTGATGAGCAGGGTAGAGCTCTTCTCACATGGAAGAGTAATCTAACGAGCTCTACAGATGCTTTGAGTACATGGAATCCGGAGGACCCGACACCGTGTTCATGGTTTGGAGTTGTCTGCAACTCCCATGGATATGTAGAGGAGATAACCCTGGCATCACTGGATTTGCGAGGTACATTGCCATCGAATTTCCAGGCTCTTAAGTTCTTGAGGACCCTGGTGATATCTGAGACGAATATAACCGGAAGAATCCCGAAAGAGTTTGGAGATTATAACGAGCTCAGAGTTCTTGATCTTAGCCAAAATAACCTTTTGGGAGAAATCCCAGAAGAGATTTGCAGGCTGGGGAAGCTGGAGGATTTGTCCCTTCAAAGCAATGGGTTTGAAGGGACGATACCGTTAACGATTGGGAATCTTTCGAACCTCGTGTATCTTAGACTCGCAGACAATGAAATCAGTGGGGAGATTCCAAAGAGCATTGGAATGTTGCAGAAGCTTAATCTTTTCAGAGCTGGAGGGAATAAACTTCTGGAAGGTAAATTGCCAATGGAGATTGGAAACTGCAGCAGTTTAGTCATGTTAGGCCTAGCCGAAACCGGAATCTTCGGAGCTCTTCCTTCATCGATTGGGATGCTGAAAAACATACAGAACATAGTCATATATAAAGCACAACTTTTCAACACAATCCCGGAAGAGATCGGAAACTGCAGTGAGTTGCAAACTCTTATATTGTATCAGAATAGCATTTCTGGGCGGATACCTAGAGGAATTGGGAAGCTGAAAAAGCTTCAAACACTTTTTCTATGGTTGAACTTGTTGGAAGAATCTATACCAGAAGAGATTGGAGACTGCGAGGAACTCGTAATCCTAGACGTTTCCGAAAATCTTCTAAATGGAACCATACCGAAAAGTATAGGACGGCTACCTAAACTTCAAGAGTTTCAACTAAGTCTTAATCAGATTACGGGTTCAATACCTCCGGAAATGTTTAATTGTTCGACTTTGGTTCATGTGGAAGTAGACAACAACAAACTTTCGGGCGAGATACCGGTTTCGGTAGGCAACCTTAAGAACTTGCATTTATTTTTTGCTTGGGAGAACAAATTAACAGGCAGTATTCCCAGCACTCTCTCAGACTGCCCTGATCTCCAGGCCATTGATTTCTCGTACAATCACTTGACGGGTTCAATACCGAAAGAGATCTTCGGTTTAAAAAATCTCACGAAACTTCTTCTCATACGAAATAATCTATCGGGAATCATTCCACCTGAAATAGGACATAGTAGGACACTATCGAGGTTTCGACTGGCTAAGAATAGGTTTGGAGGTACTATTCCATCAGAGATGGGACATTTGAAGAGCTTAGATTTTCTGGACTTAGCTGAAAACCATTTTGTTGGAGAAATTCCTCAATCGTTATCGAACTGTGACGTTCTTCAGTTTATTGACCTCAGTTCAAATGAGTTCACCGGTACTCTTCCAATCGAACTGCCGATGAGCCTACAGTTTTTAAATATATCCAACAACAGGCTTGAAGGTCAGGTCAACCCGGGCATCGGAGCTTTGACGGAACTAACAAAACTTGACCTGAGAAACAACCAACTTTCAGGGCAAATCCCAGCAGAAATTGTTTCCTGTCAAAAGCTTCAATTTTTAGACCTCAGCAACAATTTCTTCTCTGGGGAACTCCCTAAGCAATTAGGTATAATTTCTTCACTTGACATTGCTCTTAATCTAAGTTGGAATCGTTTCTCAGGTGAAATCCCGTCCGAATTCTCTGGTCTCGTCAGGCTAAGTATTCTAGACCTCTCCCATAACAACCTCTCTGGGGACCTAAGCCTTCTTGTAGAGCTTGAAAACCTTGTGACTCTAAACATCTCCTACAACCACTTCTCCGGCGAATTGCCCGACACGCCATTCTTTCAAAAGCTCAGTAAAAGCGCCATTGCTGGAAACAAAGACCTCTATGTTTCAGGTGAGCAAGTAATTCCTGAAGGCAAGTTTGAATCCAGAAACGTAAGCAAAGAAGCAATAAAGATAGTCCTGCCAATCTTGATCAGCATAAGTGCAGTGCTTTTCTTTTTAGCGATCTACTTGCTAATTCGCACACAAATGGCTAATTTCATGCTACTGATAGATGGCGATAAATGGGAAATAACCCTGTTTCAAAAACTTGATATCTCAATCGACTACATCATTAAAAACTTAACTGAATCGAACGTGATCGGTGCTGGAAGCTCCGGTGCCGTGTACAGAATCACAACCCCAAAAGGGAAAACAGTGGCAGTGAAGAAAATGTGGTCAACCGACGAATCTGGAGGCTTCAACTCTGAAATCCGTACTTTGGGATTAATTCGACACAAGAACATAATAAGGCTACTGGGTTGGGGATCCCACAGGAATTTGAAGCTCCTGTTTTATGATTATCTTCCAAATGGAAGCTTGAGCTCTTTTATCCATGACAATGGAAAAGGAGGAGCAGAATGGGAGGCCAGATACGACATCCTCTTAGGAGTGGCTCATGCTTTAGCATATCTTCACCATGATTGTACTCCACCAATCGTACATGGCGATGTGAAAACACTGAATGTCCTGCTCGGCCATGACTTTGAGCCATACCTAGCCGACTTTGGTCTCGCCAGTAATGTGAGTACAAACAACAGCAATGATGCTTCAAAGAAGCCAATACTCAGACAACTTGCTGGCTCTTTCGGGTACATGGCTCCAGAACATGGGTCGATATTGACAGTCTCAGAGAAGAGCGATGTGTACAGCTTCGGTATAGTGGTAATGGAGGTTCTAACAGGGCGGCACCCTCTGGACCCGACATTACCTGGAGAAGGCAATTTGGCGCAATGGGTTAGAGACCATTTAGCCACAAAGAAAAACCCAGCCGACATTTTAGACTCGAAGCTTAGAGAAAGAACCGAACCCACAATGCGCGAAATTCTTCAAACCCTAGACGTCGCGTTGATCTGTGTCAGCGTCAAGTCCGACGATCGACCCCCCATGAAAAGTATAGTCGCCATGCTCGAGGAGATTCGAAGTGTTGAAGTGGGGAAAGCTGCTACCGATGACCCCAAGTCGGAAAAGCCGGTGGTGATTCAATCGACCCTGCAGAGGAAGTTTTCGTCTCAAGGATCTTTGTATTGCAAATCTCCTTTGTAG 3267 43.59 MAAILRNPLIPSQFFAIALILSLSIRLFPCCYSIDEQGRALLTWKSNLTSSTDALSTWNPEDPTPCSWFGVVCNSHGYVEEITLASLDLRGTLPSNFQALKFLRTLVISETNITGRIPKEFGDYNELRVLDLSQNNLLGEIPEEICRLGKLEDLSLQSNGFEGTIPLTIGNLSNLVYLRLADNEISGEIPKSIGMLQKLNLFRAGGNKLLEGKLPMEIGNCSSLVMLGLAETGIFGALPSSIGMLKNIQNIVIYKAQLFNTIPEEIGNCSELQTLILYQNSISGRIPRGIGKLKKLQTLFLWLNLLEESIPEEIGDCEELVILDVSENLLNGTIPKSIGRLPKLQEFQLSLNQITGSIPPEMFNCSTLVHVEVDNNKLSGEIPVSVGNLKNLHLFFAWENKLTGSIPSTLSDCPDLQAIDFSYNHLTGSIPKEIFGLKNLTKLLLIRNNLSGIIPPEIGHSRTLSRFRLAKNRFGGTIPSEMGHLKSLDFLDLAENHFVGEIPQSLSNCDVLQFIDLSSNEFTGTLPIELPMSLQFLNISNNRLEGQVNPGIGALTELTKLDLRNNQLSGQIPAEIVSCQKLQFLDLSNNFFSGELPKQLGIISSLDIALNLSWNRFSGEIPSEFSGLVRLSILDLSHNNLSGDLSLLVELENLVTLNISYNHFSGELPDTPFFQKLSKSAIAGNKDLYVSGEQVIPEGKFESRNVSKEAIKIVLPILISISAVLFFLAIYLLIRTQMANFMLLIDGDKWEITLFQKLDISIDYIIKNLTESNVIGAGSSGAVYRITTPKGKTVAVKKMWSTDESGGFNSEIRTLGLIRHKNIIRLLGWGSHRNLKLLFYDYLPNGSLSSFIHDNGKGGAEWEARYDILLGVAHALAYLHHDCTPPIVHGDVKTLNVLLGHDFEPYLADFGLASNVSTNNSNDASKKPILRQLAGSFGYMAPEHGSILTVSEKSDVYSFGIVVMEVLTGRHPLDPTLPGEGNLAQWVRDHLATKKNPADILDSKLRERTEPTMREILQTLDVALICVSVKSDDRPPMKSIVAMLEEIRSVEVGKAATDDPKSEKPVVIQSTLQRKFSSQGSLYCKSPL 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5757751 5761097 + Carg24738-RA Car09g00936 154673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00936 1088 Pfam Leucine rich repeat 389 450 IPR001611 GO:0005515
Car09g00936 1088 ProSiteProfiles Protein kinase domain profile. 769 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00936 1088 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Car09g00936 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Car09g00936 1088 Pfam Protein kinase domain 771 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00936 1088 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515
Car09g00936 1088 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Car09g00936 1088 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00936 Car-Chr9:5757751 Car17g00104 Car-Chr17:620658 0 dispersed
Car09g00936 Car-Chr9:5757751 Car11g00076 Car-Chr11:405604 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89102 PF00069 Pkinase 7.30E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00936 - - mcha:111010465 1429.85