Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00938 ATGACAGCCATGGCGGGTTTCAGCGTCCGAGCCTCGATTCAGCTTCAACTTAGAGCTCTTTCAATATCCTGGGTGAAGAACAGCGGCGTTGTTACTTGCTTGAATGCTAGAGTGTATAGCTCGTCAGGTCCTGTTAGGTATACTCCAAAAAGGTCTTTGAATGATAAGAAATCAAAAACACCTTCGGTACCGGAAATTGCAAATGGAAACGATTTCAGTAGTAAGTTGGATGTTAATTCTCCGAGGATTGAGGTTAAACATCGGGGTGCAGTACGGAGAAGTAATTTTTATGATAAATTTCGTGATCAAAATCCAGACGAGAAGAAAAACTATTCAGCTGGTGGAAGTATGGCAGGACTTAAAGATGAATTTCATGACAATTTGAGCTATGTTGATGATCACTTGGAAGAGCCTGAGGCAGTAGGTGAGAAGGAAAATATTTACGGCAAGAAAGGTTATGATGGAAAGGTTGATTTGCGGGGAAATAAAAGTAGGCAAGATGCTGAGAAATTGGCAATTGAATTACTTGCAACAAGAGCCTTCACTGCAGTTGAGCTGAGGAAGAAATTGCTTGGCAAGAGGTTCTCTCCGGGCACAGCGGAAGCAGTGATCAATGATTTCAAGAGCAGGGGGTTGATCAACGATGGCCTGTATGCTGAAGGATTTTCTCATTCAAGGTGGTCGTCCTCCAGTTGGGGACCCAGGAAGATCAAGCAGGCACTTGTAAACAAGGGGATAGGAGGGGAAGTTGCTGAGAAAGCAATTAAACTTGTTTTTGAAGATGGTGAAGAGTTTGGTGATGAAATGTCAAGTGTGAGTTTGTCAAAGATTTCAATGGATCATTTATTCGTTCGAGCCTCGAAACAGTGGCTGCGAGGTCGGGATATACCGAAAGAGACTAGAAAATCGAGAATAGTTAGGTGGCTTCAATACCGGGGTTTTGACTGGGGTGTTACTAGAGCCATTCTTAAGAAGTTAGAAACCGAGTACCCTCCTTAG 999 43.24 MTAMAGFSVRASIQLQLRALSISWVKNSGVVTCLNARVYSSSGPVRYTPKRSLNDKKSKTPSVPEIANGNDFSSKLDVNSPRIEVKHRGAVRRSNFYDKFRDQNPDEKKNYSAGGSMAGLKDEFHDNLSYVDDHLEEPEAVGEKENIYGKKGYDGKVDLRGNKSRQDAEKLAIELLATRAFTAVELRKKLLGKRFSPGTAEAVINDFKSRGLINDGLYAEGFSHSRWSSSSWGPRKIKQALVNKGIGGEVAEKAIKLVFEDGEEFGDEMSSVSLSKISMDHLFVRASKQWLRGRDIPKETRKSRIVRWLQYRGFDWGVTRAILKKLETEYPP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5763200 5767045 - Carg24736-RA Car09g00938 154675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00938 332 Pfam RecX family 193 325 IPR003783 GO:0006282
Car09g00938 332 Hamap Regulatory protein RecX [recX]. 155 330 IPR003783 GO:0006282
Car09g00938 332 MobiDBLite consensus disorder prediction 45 73 - -
Car09g00938 332 MobiDBLite consensus disorder prediction 59 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00938 - - - bhj:120085566 519.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g726 . . . Bda09g00446 . Bpe08g01083 . . . . . . . Car09g00938 Sed07g2766 Cpe06g00840 . Bhi09g01817 Tan01g3232 Cmetu01g0567 . . Mch11g1311 . . . . . . . . . . . . Lsi02g01802 Csa07g01063 . . . . . . . . Bma07g01238 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013129 1 2 0 1 1 1 1 0 1 1 0 0 0 1 1 0 0 1 1 0 1 2 1 1 1 1 1 4 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00938 Car_Chr09 FPKM 91.001091 90.243858 158.592041 154.334045 17.479382 16.015844 16.792166 70.192581 74.444809 79.262596