Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00939 ATGCCGCAGGAATTAAGCTTCAGAAATTCGATTTTAACGTCTCCGAACAAGAATATGCCGAGAGGATTGAAAGCTCTGGTTACGAATTGTAATGATCAGGTTTCTTCTAATTCTGTGATTTCTGAGGAGGTTATCAATGATCATGAATTGGCTCAACGCAAAGCCGAAGAAGCTGCATTTAGGAGGAATCAAGCAGCAGGATGGCTACGCCAAATGGATCATGGAGCATCAGGAGTACTATCGAAGGAGCCCTCTGAAGAAGAATTCTGTCTTGCACTTCGCAATGGTCTTATCCTCTGCAATGTCCTCAACAAAGTCAATCCTGGTGCTGTTCTTAAGGTGGTGGAGAGTCCAGTTGTAACTGTACAGTCAGTAGAAGGAGCAGCACAATCTGCAATTCAATATTTTGAGAACACAAGGAACTTCTTGGAGGCGGTTAAAGACATGAAGCTCTTGACGTTTGAAGCTTCCGACTTGGAAAAGGGAGGTACTTCAGGAAAAGTTGTTGAGTGTATTCTCTGCTTGAAAGGATATTATGAGTGGAAGCAAGCTGGTGGGATTGGGGTTTGGAGATATGGAGGAACTGTACGGATCACATCTCTTGCCAGAAGTTCACCTTCCATAACTGAAAGTGATAGTACAGATGAATCGGTAGATGAATCGGATTCGTCTCAGTTTGAGCAGCTACTAGACTTCCTCCATCTTTCTAATGAAGTTTCAGTTGAAGAATCCAGAACTTGCAGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTTATACTCTTACAAGCATACCTCCGAGAGAGTAATCGGATTGAAGATTTGCCTTTAAATGCAATGGTAATTGATGCATTACTTAGCAAGGTTGTTAAGGATTTCTCTGCACTGCTTGTGTCTCAAGGCACTCAGCTTGGACTCTTTCTGAAGAAAATATTGAAAAGTGATTTAAGTTCATCATCAAAATCTGAATTCATTGAAGCAATATCCCGATACATCAACCAAAGAGCGAATATGGCATCAAGCGACTTCTCGAAATTCTGTGTTTGTGGAGGAAAACGTGAGGTTATTCATAGGGCTCCTGCTGACCATGAAGAACTGGTTCATGCTCAACAGAATCAGATTCAGGAGCTAAAATCAGCGTTTCAAGAAACCAAACTTGAAGTTAAACACATACAGTCTCAATGGAATGAAGAAGTTGAAAGGCTAGAACATCATCTCAAGGGCCTTGAGATGGCTTCCTCTTCTTACCACAAGGTCTTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTGTACTGTAGAGTGAGACCTTTCTTATCGGGACAATCAAACCAGCATTCTACAGTGGACTATATTGGAGAAAATGGGAACATTATGATTGCAAATCCTCTAAAGCAAGGCAAAGAAGCAAGAAGAGTATTTTCCTTCAATAAAGTTTATGGAACTAATGTTACCCAAGAACAAATATATATCGACACTCAACCGTTGATCAGATCCGTTCTTGATGGTTTTAATGTTTGTATCTTCGCATATGGACAAACTGGCTCGGGAAAGACGTATACAATGAGTGGCCCAGATTTGATGACTGAGGACACATGGGGCGTTAACTATCGAGCTCTCAATGACTTATTCCAGATATCAAATGCAAGGTTGGATATGATAAAGTATGAAGTTGGAGTTCAAATGATTGAAATATACAATGAGCAAGTGAGAGATTTGTTAGTCAATATACGAAACAACTCTCAACTCAGTGGCCTCAATGTGCCCGATGCAAGTTGGGTTCCTGTGACATGTACTCAAGATGTTCTTGGTTTGATGAGAGTTGGCCAGAAGAATCGAGCTGTTGATCTAGCTGGGAGTGAAAGAGTGGACAAATCTGAAGCTGTCGGCGACAGACTAAAGGAAGCACAACATATAAACAAATCCCTCTCTGCACTTGGAGATGTGATTTCTGCTCTTGCACAAAAGAGTTCACATATTCCTTACAGGAATAGCAAACTAACTCAACTCTTGCAGGATTCTTTAGGTGGACATGCTAAGACCTTGATGTTTGTACACATAAACCCCGAAGTTGATGCACTTGGAGAGACAATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCTATAGAATTAGGTGCAGCTCGCTGCAATAAAGAAAATGGTCAAATTAGAGAACTTAAAGACGAGATATCAAATCTCAAATCGGCATTGGAGAGGAAGGATGCAGAGCTTGAACAACTAAAAAGTGGAAACGCTCGAGCCGTCGTAGAAAATCCGAAGCCGAGAGCTGCCTCTCCCTTCCGTGTGCTAAGACATGGTACCAATGGAGGTGCTAAGCCTGAAAATTGTCAAAGGCCTTTGGATGAAGCTAAAACTTTGGAGGCTAGAAGCTACTCTTCAGGAAAGCAAAGAAGGTCTAGATTTCCCTCTACATTCACAGAGAAAGATGCAATAAAAATGCCATTATTAGCTGAAGAGAGATCAACAACAAGTTCCAGCTCTGGAAACCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACGGATCGAGGTGCCTTTATAAGAAGCAAGGTACGAACGGAAACGAACGAAAACCAACCAATATCAAAGCCTTCATTTCCAACGAAAGCGCCTGTTAACAAGTCAATGGCCTCGATTCAAGCAATCGATAATCGAGGAAGAGTAAACATCAGTTCTCAAGAGCATGAAAACGTCTCTGATGCATTGGTTGGTATCCAAAAAACAATGGCTTCAACAAAGAAGAAACAACTGGTTTGCCAAGAAAACAATGAAGATGAACAACAGTTGAAGCAGTCTGTAACTACAATGCAAGGTGGTGCAAGGAGAAGCAAAAATGAAGGGAAAAGCAAAGCAAAGCAACAGCAGATGCCTGGTGCAGCAGCAGCAGCAGCAGCTAGGATTAACAACAACCAGAGGCAGCCTGAACATGTGGTAACAACATTACTTACTGACATTAATGCTGCTGGAAAAATGGAGGATGCAAGAAAGATCGACTTCTCTGAAATGGAGAATGAGCATTTTATAGGGGGAGATGGTGCTTTGAAGGGCGAAAAAGCTCGTCAGAACTTCCCAAGGAATTCTCAGAATCTGGAACCACCGAGAGTAGCCGTTGAAAGTTTACTGACTACAAACCAAGTCGAGAATGAGAGTCGCAATCAAAGTGAAGTCAACGACAAATCAATGCCCGAATTTCGAAGAATTAGATCAATACCTCGTGGGAAATTTTTGGTAACATCATGA 3294 41.62 MPQELSFRNSILTSPNKNMPRGLKALVTNCNDQVSSNSVISEEVINDHELAQRKAEEAAFRRNQAAGWLRQMDHGASGVLSKEPSEEEFCLALRNGLILCNVLNKVNPGAVLKVVESPVVTVQSVEGAAQSAIQYFENTRNFLEAVKDMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLARSSPSITESDSTDESVDESDSSQFEQLLDFLHLSNEVSVEESRTCSALAFLFDRFGLILLQAYLRESNRIEDLPLNAMVIDALLSKVVKDFSALLVSQGTQLGLFLKKILKSDLSSSSKSEFIEAISRYINQRANMASSDFSKFCVCGGKREVIHRAPADHEELVHAQQNQIQELKSAFQETKLEVKHIQSQWNEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLSGQSNQHSTVDYIGENGNIMIANPLKQGKEARRVFSFNKVYGTNVTQEQIYIDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTEDTWGVNYRALNDLFQISNARLDMIKYEVGVQMIEIYNEQVRDLLVNIRNNSQLSGLNVPDASWVPVTCTQDVLGLMRVGQKNRAVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSSHIPYRNSKLTQLLQDSLGGHAKTLMFVHINPEVDALGETISTLKFAERVASIELGAARCNKENGQIRELKDEISNLKSALERKDAELEQLKSGNARAVVENPKPRAASPFRVLRHGTNGGAKPENCQRPLDEAKTLEARSYSSGKQRRSRFPSTFTEKDAIKMPLLAEERSTTSSSSGNPRSPSPPVRRSISTDRGAFIRSKVRTETNENQPISKPSFPTKAPVNKSMASIQAIDNRGRVNISSQEHENVSDALVGIQKTMASTKKKQLVCQENNEDEQQLKQSVTTMQGGARRSKNEGKSKAKQQQMPGAAAAAAARINNNQRQPEHVVTTLLTDINAAGKMEDARKIDFSEMENEHFIGGDGALKGEKARQNFPRNSQNLEPPRVAVESLLTTNQVENESRNQSEVNDKSMPEFRRIRSIPRGKFLVTS 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5768759 5777947 - Carg24735-RA Car09g00939 154676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00939 1097 ProSiteProfiles Calponin homology (CH) domain profile. 59 180 IPR001715 GO:0005515
Car09g00939 1097 Coils Coil 367 412 - -
Car09g00939 1097 Coils Coil 725 759 - -
Car09g00939 1097 MobiDBLite consensus disorder prediction 936 960 - -
Car09g00939 1097 Pfam Kinesin motor domain 442 623 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car09g00939 1097 MobiDBLite consensus disorder prediction 1060 1083 - -
Car09g00939 1097 MobiDBLite consensus disorder prediction 869 892 - -
Car09g00939 1097 MobiDBLite consensus disorder prediction 834 855 - -
Car09g00939 1097 MobiDBLite consensus disorder prediction 765 892 - -
Car09g00939 1097 MobiDBLite consensus disorder prediction 936 989 - -
Car09g00939 1097 ProSiteProfiles Kinesin motor domain profile. 436 718 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car09g00939 1097 Pfam Calponin homology (CH) domain 81 180 IPR001715 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00939 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 1757.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00932 Car09g00939 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00939 Car-Chr9:5768759 Car14g00837 Car-Chr14:4932023 0 dispersed
Car01g00932 Car-Chr1:9009409 Car09g00939 Car-Chr9:5768759 2.55E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00939 Car_Chr09 FPKM 11.571099 10.943583 16.407642 13.514962 23.77803 22.724255 24.503094 27.703028 29.06344 29.521982