Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00943 ATGGGAGAGTCGTCCAGAAAATGGATAACGCATTACGGCAGCTCCCACGACATACTCCTTGTTGGAGAAGGCAATTTCTCCTTCTCAGCTTGCTTGGCCTCCGCCTTCGGCACTGCTACCAACGTGGTTGCCACTTCTCTCGACTCCGAAGAGACATTGTTGAGAAAGTACGGCTCGGACATTAAGACAACCTTGGAAGAGCTGAAGGAGCTGGGTTGCAGTGTGATGCATGGAGTGGACGTAACGACAATGAGCCAACACCCACTTCTCTGTCACACCTTGTTTGATCGCATTGTCTTCAATTTTCCTCATGCTGGTTTTCAATACTCAGAACATGAAACCAGACAAATCAAACTCCACCAGAATCTAGTGAGAAGATTTCTGAGAAATGCAAAAGAACTATTGGCAGAAAATGGGGACATTCACATAACCCACAAGATTTCATTTCCTTACAGTGAGTGGGAGATTGAGGAAGTTGCAGAAGAAGAGGACTTATTTTTAAGAGAGTTAGTAGAGTTCAATATAGGGGATTATCCAGGTTATGTCAATAAGAAAGGCAGTGGGCCAAACAGCAACCTTACCTTCCCTGTTGGACTATGCAGCACTTTCAAGTTTGTTAAAACACTGTCCAAGAAAATGAGGGAGAAGAGGTTGGCCAAGGCTGCTGAATTTTCCCAACTCATGTTTCATCTATCAGTTTGA 702 44.44 MGESSRKWITHYGSSHDILLVGEGNFSFSACLASAFGTATNVVATSLDSEETLLRKYGSDIKTTLEELKELGCSVMHGVDVTTMSQHPLLCHTLFDRIVFNFPHAGFQYSEHETRQIKLHQNLVRRFLRNAKELLAENGDIHITHKISFPYSEWEIEEVAEEEDLFLRELVEFNIGDYPGYVNKKGSGPNSNLTFPVGLCSTFKFVKTLSKKMREKRLAKAAEFSQLMFHLSV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5803003 5805894 - Carg24731-RA Car09g00943 154680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00943 233 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 19 184 IPR019446 GO:0070042|GO:0070475
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00943 - - K19307 tcc:18593212 239.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02092 Car-Chr4:17084483 Car09g00943 Car-Chr9:5803003 2.89E-84 dispersed
Car09g00943 Car-Chr9:5803003 Car07g00320 Car-Chr7:1616277 1.73E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g774 . . . . . . . . . . . Cma09g01036 . Car09g00943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01040 . . . . . . . . . . . . . . . . . . . . . . Chy01g01022 Cme01g01097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000968 3 1 1 2 2 2 2 2 2 3 1 2 2 3 3 3 2 3 3 2 3 4 3 5 7 3 4 3 4 0 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00943 Car_Chr09 FPKM 1.518499 1.191629 1.274914 1.120582 2.614904 2.279056 2.878169 4.241168 3.966196 4.413816