Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00953 ATGCATCCCCGTCACCGTAATACGGGTAATGGGTTTAGGTCTAGTTCCATGGGAGTTGGATTAGCTTCTTCTCGAATCTCTCCCGAGGGATCGGTTAGGGGCCATGGTGGCGCGTATGGCAATGATTATCGCAATTTTAATCATCCGAGTAGCTTTGGGCGCGGTCAGGGATACCCCAAATCATATCAATCATCCCAATCACTGCCTCCTCCGCGAAGAGGTGGGGGTTCTGTTGACATTTTTATGGAAGCAGGTCGTCTTGCAGCCGAATATCTGGTTTCTCAAGGTTTGCTCCCATCTAGTGTTTTGTCTGGTAAATGGCAAGGTGGAAGTTTGAGGAGGGAGTCTTCTGAATTTCAGGAATTTGGTCCATTTCGCGAAGAAGGACGAACATCCAATGCTGCCCCTCCTCATTCAGGACATGTTGGACCTGATTTCGGGCCAGGTAGGAGGCAGCCATCTGATGAGTATAGTTTGGCACCGTCACGAAATCATTTGAGAGGACGAAGAAGATCCTCGTCTTTCCGAAGTAGTGGTTCTGATTGGAGTGGCCAAGAGTACAGTAGGAGCAATAATTACAATGATAGAGCTAGAGCTTCTTCAGATACAGAGGCTTATGACGACGCTGATAATCTTTCTGCTTATGGTAATCGACAGCAAACTGGTGAAGAAGTTGGTACTGAATTTCAAGTTCTCAAACCTTCCAAGTTAGGACGAAAAGGTGACACACCTGAGGATTCAGGACCTGAACTGGTTAAGTACCCTTTGCCAGATGATGTAGGCTCGAAGGCAAGTATTTCTGCTGTTGCGAAAGACCTGCCAAATGAGCAGAAACTTGCTAAAGATTCTGATGATTTATGTAATAATAAAGCCGATGACGGTGATTCTGTGGTGAAGCCAGAGACTGATCTACTAGCATTCTGCAGATTTACTAAGTTCCCCACCAAAACTCGCTCTGCCTTGGCATACAAGGTTTCTAAGGCAGATCCTATTGCAACTGTGTCAGAACAACCTTCTGTTATCAACCCTATCAGATCTGAACTTTCAATTGACAGTAACTCGTCTACTTGTGCGTTATCTGGTGCTGTATCAGCTAAAATCCTTGATGTCGAAAATCTAAACTCTGAAAGATCTGAACCACAAGCTACTGAGGAAGCTGTTATAATGGAGGAGGCATATCCTAGATTTGGTGAGAAGGCTAGCTCTTTGACGTCTCATTCTTTCCAGCATGGACCATTTTGGAATGAGAGCAAGGAAGAATCTTGCCGAACTCCTGCCGTATTTGGAAGGAGTAATTCTATGTTCGAGGAAAAGGGTCAAAAGCGGTCATTGGATGAGAGTGATGTGGGGGACGGGAATAAAAAACCAAGAGAATGGATTCCGTTGATGAATTCTAAGGAGGAAGATGAAGCCTTTGACCTTCTCAAGTTTGATAAAGCGAAAGTTAGTTCTGAGGAAAGCAAGCCAGAGTGTGATAATGAAGTTATTGTAGCTGCTGACTGCGTGAACTCAGTGGATGGTTTTCATTTCATAAAGAACGGAGGTGAGCAATGTGTAGATTATGCACAAGAAAAGCAGCTTTTTCCGAATTCATTTAAGATCTGCGACCTTAACCTTATGGAGGCTTCTGATATACATGATAATCATGAAAACAATCCTCTTCTCATCTTCCAATCTATTTCTGAATCAAAAAGAGAAAGAGCTCCTGTTGAAATCGGCTTGTCTATAAGCAATGCTACTGAATTTGGCCAAAATAGTGTGGTGGCTGGCGGTAAAGAGATCGAAATTATTGATTTAGAAGATGACTCTAATGCTCAAGTAGACAAGACCTTCCATAATCTAGAGACAAAGAGGGAGCCTGTATTTACTGGATTGGACGGCTTTCCTAACAACGAACAAAACAGTGGAGATATGCCTGATGTTCACGATGGCTATGGACTAATGATTTCAGAGTTGCTTGGAGCAGAATTCCCCAACTGTGCTTCCGTACAAGGAGACATTAATTCAATGCACAATGAAATGTCTCTTTCGAATGGAGAAGTACTTCCTTGCTCATATCCAACTTCATCATTTATTGAAGATTCTCCTTTTTGA 2094 43.22 MHPRHRNTGNGFRSSSMGVGLASSRISPEGSVRGHGGAYGNDYRNFNHPSSFGRGQGYPKSYQSSQSLPPPRRGGGSVDIFMEAGRLAAEYLVSQGLLPSSVLSGKWQGGSLRRESSEFQEFGPFREEGRTSNAAPPHSGHVGPDFGPGRRQPSDEYSLAPSRNHLRGRRRSSSFRSSGSDWSGQEYSRSNNYNDRARASSDTEAYDDADNLSAYGNRQQTGEEVGTEFQVLKPSKLGRKGDTPEDSGPELVKYPLPDDVGSKASISAVAKDLPNEQKLAKDSDDLCNNKADDGDSVVKPETDLLAFCRFTKFPTKTRSALAYKVSKADPIATVSEQPSVINPIRSELSIDSNSSTCALSGAVSAKILDVENLNSERSEPQATEEAVIMEEAYPRFGEKASSLTSHSFQHGPFWNESKEESCRTPAVFGRSNSMFEEKGQKRSLDESDVGDGNKKPREWIPLMNSKEEDEAFDLLKFDKAKVSSEESKPECDNEVIVAADCVNSVDGFHFIKNGGEQCVDYAQEKQLFPNSFKICDLNLMEASDIHDNHENNPLLIFQSISESKRERAPVEIGLSISNATEFGQNSVVAGGKEIEIIDLEDDSNAQVDKTFHNLETKREPVFTGLDGFPNNEQNSGDMPDVHDGYGLMISELLGAEFPNCASVQGDINSMHNEMSLSNGEVLPCSYPTSSFIEDSPF 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5919608 5921961 - Carg26617-RA Car09g00953 154690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00953 697 MobiDBLite consensus disorder prediction 126 260 - -
Car09g00953 697 MobiDBLite consensus disorder prediction 435 458 - -
Car09g00953 697 MobiDBLite consensus disorder prediction 433 458 - -
Car09g00953 697 MobiDBLite consensus disorder prediction 44 71 - -
Car09g00953 697 MobiDBLite consensus disorder prediction 8 22 - -
Car09g00953 697 MobiDBLite consensus disorder prediction 173 199 - -
Car09g00953 697 MobiDBLite consensus disorder prediction 1 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00953 - - - cmax:111476727 1300.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00914 Car09g00953 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00914 Car-Chr1:8866443 Car09g00953 Car-Chr9:5919608 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g791 . Blo03g01496 . Bda09g00454 . Bpe08g01072 . . . . Cma01g01040 Cma09g01046 Car01g00914 Car09g00953 Sed07g2784 Cpe06g00853 Cpe02g00852 Bhi09g01848 Tan01g3262 Cmetu01g0448 . . Mch11g1337 . . . . . . . . . . . . Lsi02g01782 Csa07g01040 . . . . . . . . Bma07g01231 . . Cmo01g01079 Cmo09g01052 . . . . . . . . . . . . . Cla09g02118 Cam09g2205 Cec09g2278 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004841 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00953 Car_Chr09 FPKM 12.86326 14.030624 4.162518 3.865168 27.568338 30.927616 28.421368 1.85743 1.823404 1.594966