Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00956 ATGGCGTTGCAGAGATTACCTCGCAGCATTCTAGTGGAGATCCTGTTGAAATTGGACCCCGAAACCCTCTGCTCCGTCGCCTGCGTCAGTAAAGCCCTACGATTCGCCGTCGTTGATGCCATTTCCTTTCTCTCCACTCTCCATCTTCCAATCGCTTTCTTTCCAGATTCTCGTACTCTGAAGACTGGCATTCTAGGTCGGTGTCGAGGCATGAGAAGCCTGACTGTTAATTGCCTTCGCCTTGATGATTCTTCTCTCGTGGATTTTCTTGGCCCTAATTTACTCGAGCTGAATTTGCTTTGCTGCTCTTCACTCTCTAGTAAATTCCTTGCTGAAGTAGGCAAACTTTGTCCCAATCTGAGGGTTCTTGTGCTTGAATTGGCAGCTCAAGATGATTACGAAGAATTCAACAGAAACTTGGCTGAAATGCTCACAAGATGCTTGCTCTTGGATTCGATATCCTTAAAGATTCGAGGAGCAGGAAATGTTGAGGCTAATTCCTTTAGTGCTGTTGAAGCATTTCTTCCCAAAACCACCAAAACACTGAAGTTGAAGTCACTGCTTCATGATGATGCAATTTGCATCATAAACAAACTAAGAGATTCTGGGAACTCCTTAATCAACCCCTGTTCCAGAAACTTTGAATCTCCTCCATTATCTACAGGGTTAATGTTGCAGTGCTTGTCACTTACCTTGGATGTTATATCTGATGAGTTGATTATGACCATTGTTGATTCTCTTCCTTTTTTGGTAGAGCTTCACTTGGAAGACATGGCGAGCCCCGAACAATTGGTGCGCCGTGACTTGACCAATAGGGGACTTCATTCGTTGAGCACTTGTCATAATCTGAAATCACTGTCTCTAATGCGTGGTAGATATAATCACCAAGTTTCTTTCAAAAAGTTGAATGATATGGGTATGTTTCTCTTGTCTGAGGGTTGCAAAGGTCTCGAGTCGGTGAGATTCTGTGGATTCTCTAAAGTCAGCGATGCTGGATTTGCGTCGATCTTTCACTCGTGCAATAGGCTGAAAAAATTCGAGATTCGTAATGCATTATATTTGTCAGACCTGGCATTTGACGGGTTTGATGCCATTGGTTGCTTTGTGACAGAGTTGAGATTGTTTTCCTGTAGTCTCATAACTTGTGAATCTGTGAAGCATTTGGCCTACTCTACACGCTTGGAAGTCCTTGATCTATGTGGCTGCAAGAGCATATCAGATTCTTGCCTTGATTCCATTTCCACTTTGTGCCATTTATCATCATTGATTCTAACTGCAACTGATGTAACCGACTTAGGTTTATCTGTTCTTGGTCAGGGAAGGCCACCCATCGTACGATTGTCTCTTCGAAGTTGTAAGAGAGTAACCGACGAAGGAATCTATCGATTGTTTCATGGTGGCGGGACAGTGAGCAAGACGTTGTCTGTCTTGGATATTGGACACATTTCAGGCATAACTGATAGAGCAATCCAAATAATTGCTTCTGTTGGTGTCGGTATTACCGAGTTGTGCATCAGATCTTGCTTCCATGTGACCGATTCTTCGGTGGAAGCTTTGGCGATGAAGAAACATTTCGAAGGTGAAGGTATGTCGCTTCGCAGACTCGATCTTTTTAATTGCATTGCTTTATCAATTGATGCTTGTAGGTCATTTAGGGAGCCTCTGTTTTCTGGGTTACAATGGCTAGGAATAGGCAATACTCGTTTGAGTAGTGATGGAAATGTTGGTTTAGTTAAGTTTTGTTCCAAACGACCTTGGTTGGCATTGTGTTTGGAAGGCTGTGAAGTTGGATGCCATGATGGATGGCAATTCCATAGATCAAAATGA 1827 43.08 MALQRLPRSILVEILLKLDPETLCSVACVSKALRFAVVDAISFLSTLHLPIAFFPDSRTLKTGILGRCRGMRSLTVNCLRLDDSSLVDFLGPNLLELNLLCCSSLSSKFLAEVGKLCPNLRVLVLELAAQDDYEEFNRNLAEMLTRCLLLDSISLKIRGAGNVEANSFSAVEAFLPKTTKTLKLKSLLHDDAICIINKLRDSGNSLINPCSRNFESPPLSTGLMLQCLSLTLDVISDELIMTIVDSLPFLVELHLEDMASPEQLVRRDLTNRGLHSLSTCHNLKSLSLMRGRYNHQVSFKKLNDMGMFLLSEGCKGLESVRFCGFSKVSDAGFASIFHSCNRLKKFEIRNALYLSDLAFDGFDAIGCFVTELRLFSCSLITCESVKHLAYSTRLEVLDLCGCKSISDSCLDSISTLCHLSSLILTATDVTDLGLSVLGQGRPPIVRLSLRSCKRVTDEGIYRLFHGGGTVSKTLSVLDIGHISGITDRAIQIIASVGVGITELCIRSCFHVTDSSVEALAMKKHFEGEGMSLRRLDLFNCIALSIDACRSFREPLFSGLQWLGIGNTRLSSDGNVGLVKFCSKRPWLALCLEGCEVGCHDGWQFHRSK 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5948377 5950788 - Carg26620-RA Car09g00956 154693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00956 608 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515
Car09g00956 608 Pfam F-box domain 3 37 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00956 - - - csv:101218770 920.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00956 Car-Chr9:5948377 Car11g01390 Car-Chr11:11376832 5.12E-74 dispersed
Car09g00956 Car-Chr9:5948377 Car05g01207 Car-Chr5:11411136 5.44E-07 transposed
Car09g00956 Car-Chr9:5948377 Car04g01273 Car-Chr4:7386743 2.72E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00956 Car_Chr09 FPKM 4.084682 5.171993 4.122289 4.626587 1.53884 1.323233 1.75562 5.922694 5.229396 5.30125