Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00971 ATGGGCGCAGGGCTTTCGAGTAAAAGACTTGCAGAAACTTCTTTCGCCTCTCTGTTCACTCTCTGCCCAGAACACAACACTATGCCATCTTCCAGTGTTTCAGCTTTGGATGCCAAAGAAGAGGGCAAGTCGAACGTGGGCAATACGGAGGAGGAGGAGGAGGAGGAGAAGCCCAGCTTCTTCGATATCTATGGAACCGATGCTAAAGCTGAGGTTCTTTTCAAAACTCCAGAATCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGGGCTTGTAACTTGGGTGCTTGCGGAAGGTTTCATGCCATCGTGGGTTTTTATCAAGAATAAACCCCTAATCCCCAAAGTGGTCATGGTTTATCTCCCTGGCCTGGATGCTGCTCTATACATGTCACAGTCCAAGATACTTCCTACATTTAAAAGATTCTGTGGCAGTCCAAGGCCAGTTTTAGCTCTTAGCTGTATTTCAGATAGAATGCAAACAATTGATGCACTTTTGACGTGTAAGGTAAAGAGGAAGAGAGATGCAAACAGTGTAGACTTAAAGAATAAATTGACGTCTGAACAAGAAATATTTGGCCCTGAAAAAGACTCACCAATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACACTAACTGCCAAAGAACTGGAAGACAATGGCTATCCATTCAATCAACCAGGTTTTATCCAAACACTTCCTGCTCCTATGGGATCTTCACCTTATGAAATGGTGGCACTTGACTGTGAAATGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGATATGGCAGGACAGATCGTCCTCGACAAATTGGTAAAACCGTCAAATGCAATTGTTGATTACAATACGAGGTTTAGTGGAATTACATGTGAAATGTTAAATGAGGTTACCACTAGTCTAGAAGATGTTCAGAAAGATTTTTTGAATCTTGTTCACAAGGAGACTGTTCTAGTTGGCCATTCACTGGAGAATGACTTGATGGCATTGAAGATCTCTCACGATCTCGTCGTTGATACTGCCGTTCTATATAAGCATCCCCGTGGTGGCTCTCATAAATCCGCCCTTCGGATTCTTGCTAAAAGATTTCTTTCCAGGGAGATACAGCAATCTAGCAATGGCCACGATAGTGTCGAAGATGCAAGAGCTACTATGGAACTTGCACTTCTTAAAATTAAACATGGTAAGTGA 1221 42.51 MGAGLSSKRLAETSFASLFTLCPEHNTMPSSSVSALDAKEEGKSNVGNTEEEEEEEKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDALLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMVALDCEMCVTCEGFELTRITLVDMAGQIVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDSVEDARATMELALLKIKHGK 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6099569 6106675 + Carg26648-RA Car09g00971 154708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00971 406 MobiDBLite consensus disorder prediction 27 59 - -
Car09g00971 406 Pfam Exonuclease 250 397 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00971 K14570 REX1, REXO1, REXO5, RNH70; RNA exonuclease [EC:3.1.-.-] - csv:101215617 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00862 Car-Chr3:6932034 Car09g00971 Car-Chr9:6099569 5.05E-30 dispersed
Car07g00681 Car-Chr7:3477634 Car09g00971 Car-Chr9:6099569 1.53E-28 dispersed
Car09g00750 Car-Chr9:4453142 Car09g00971 Car-Chr9:6099569 4.98E-20 dispersed
Car01g00899 Car-Chr1:8484120 Car09g00971 Car-Chr9:6099569 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1196 . Blo12g01111 . . . . Bma04g00026 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1450 Cone7ag1482 . . . . . . . . . . . . . . . . . . . . Car09g00971 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009337 0 1 1 1 0 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 2 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00971 Car_Chr09 FPKM 2.777308 3.359449 0.386899 0.209986 25.726282 24.277872 25.774063 0.0 0.0 0.0