Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00987 ATGCGTCTCAACTCCTTCACATGTTCTTCCCGGCTTCCATCCTTCTTAAATCCACCCAATGTTGCCAGAATCGCCTCCTGTTCCACTTCAGATTGCATTTCGAACCAACTTTTATACGAAGATCACAATCCCCATTCAGAGCTTCTGCAACTTTGCTTGCATCACTGCAGGCGAATCAAAGCCCACAACCTGTTCGATGAAAAGCCTGAACCAGTTCTTCAAGTATTGAGAACAGCGAAGGTCATTCATTCGAAGAGTTTGAAGATTGGAGTTGGGCTCAATGGGTTACTGGGCAATGCAATTGTTGATCTCTATGTCAAATGCGGCAATGTGGATTATGCTCAGAAGGTATTTTCCCGGCTGGAGAAGAAGGATGTATTTGCCTGGAATTCGGTGATTTCTATGTACTCTAAGCATGGGTTATTTGCAACTGTTGTTGAATCTTTTGTGTCTATGTGGAATGATGGGGTTCGGCCTAATGAGTTCACGTTTGCGATGGTCTTATCTGCTTGTTCTAGGTTGTTGGATGTTAACTATGGTAGACAAGTGCATTGTGGTGTTTTTAAAATGGGGTTTGGGTTTAGTTCTTTTTGTCAAGGTGGGTTAATTGATATGTATGCCAAATGCCATGATCTAAGAGATGCTCGCTTGGTGTTTGATGGGGCAATTTATTTGGATACTGTTTCATGGACAGCCTTGATTGCTGGGTATGTTCAAGATGGTTTACCTGAGGAGGCAGTCGAAGTGTTTGATAGAATGCAGACAGTTGGACTTGTACCTGATCAGATAGCGCTTGTAACTGTTATAAATGCTTATGTTGCTCTAGATAGGCTTGGTGATGCTCGTAAGTTGTTTGCCCAGTTGCCCAATCCTAATATTGTAGCTTGGAATGTGATGATTTCAGGGCATGCAAAGAGAGGATTTGCAGAGGAAGCCATTTCATTTTTTCTTGAATTGAAGAGAACTGGCCTAAAAGCCACTAGGTCTACTATAGGAAGTGTTTTGAGTGCAATTGCTAGTTTATCGATGCTGAATTATGGCTTAATGGTTCATTCTCAGGTGATTAAGGAAGGGTTAAATGATAATGTGTATGTAGGAAGTGCATTGGTGAATATGTATGCTAAATGTGAAAAAATGGATGCTGCGAATGAAGTGTTCAATTCTTTAGAAGAGAGAAATATTGTCTTGTGGAATGCTATGCTTGCAGGTTTCGCGCAGAACGGACTTGCTCATGAAGTGATGGATTTGTTCTCATATATGAAACGTATCTCGATTTCGGTCGTCAACTTCATAACAGTTATGATCAAAAACAAGTTTGTATCTAATCTATTTGTTGCAAATGCGTTGGTAGACATGTATGCTAAATCTGGGGCTTTAAAGGAAGCAAGAAAACAGTTTGAGTTGATGAAGATTCATGACAATGTTTCATGGAATGCAATAATTGTAGGATATGTTCAGGAAGAGTATAATGATGAAGCTTTCTCCATGTTTCGAAGAATGGTTTGCAATGGAGATCTTCCAGATGAGGTGTCTTTAGCCAGTACAGTGAGTGCTTGTGCAAATGTTCAGGAGTTGAAACCAGGGCAACAATGTCACTGTCTCTTAGTTAAAGTTGGTTTAGATACAAGCATTTGTGCTGGAAGTTCCCTCATTGACATGTATGTCAAGTGCGGGGTTCTTTCGGCAGCTCGGGATGTCTTTTATTCTATGCCGTGTCGAAGTGTCGTCTCAGTAAACGCTCTGATTGCTGGCTACACTGTGAACCATTTAGAGGAAGCTATTTATCTATTTCAAGAGATGCAGATGGTTGGACTTAAACCTACGGAAGTAACATTTGCAGGGCTTTTAGATGGATGCGATGGAGCATCTTTGCTGAAACTAGGAAGGCAAGTTCACTGTCAAGTTATTAAGAGGGGTTTTCTGTTAGGTAGGGAAATGGTGTGTGTGTCTCTCTTGTGCATGTATATGAACTCCCAAAGACTCTCAGACTCGGAAACACTCTTCTCTGAGTTGCAGTATCCAAAAAGTTTAGTTTTATGGACTGCTTTCATTTCAGGATGTGCACAAAACAATCACTATGAGAAGGCGTTGCGATTCTATCAACATATGCGATCTGAGAATATGTTACCCGACCAAGCAACGTTTGCGAGTGTTCTTCGAGCATGCTCTGGATTGTCTTCTCTACAAAACGGTCAAGAGATTCATTCCCTTATCTTCCATACGGGTTTTAACATGGATGAAATCACCTGTAGTTCCCTTATCGATATGTATGCAAAATGTGGTGATGTTGAAAGCTCTGTTAAAGTTTTTCATGAAATGCGTTGTAGAAACAGTGTCGTTTCTTGGAACTCCATGATAGTTGGACTTGCAAAGAATGGCTATTCAGAAGAAGCACTTGAAATTTTCAGGCAGATGGAGCAACAATCTATCATGCCTGATGATGTTACGTTCCTTGGTGTTCTTTCTGCCTGTAGCCATGCTGGAAGAGTGTCCGAAGGCCGAAAGATCTTCGACGTGATGGTTAGCCATTACAGGTTACAGCCAAGAGTTGATCATTTGGGGTGTATGGTAGACATTCTTGGGAGATGGGGTTTCCTTAATGAAGCAGAGGAGTTCATCAACAGACTCGGATGCAAAGCAGATCCAATGCTCTGGTCGACTTTGCTCGGAGCTTGCAGAAAGCATGGAGATGAAGTTAGGGGGAGGCGTGCGGCTGAGAAACTTATGGAACTGAAACCACAAAGTTCTTCACCGTATGTGCTGCTCTCTAGCATATACGCTGCATCAGAGAATTGGAAACAAGCTGACTCTTTAAGGAGGGAAATGAAATCAAAGGGAGTGAAAAAGTTGCCCGGATACAGCTGGATAGAGCCAGGAAGAAGCGCACGAGGCAGCTCGTATACGATTCAGGAGCCAAGCTCGAACACATAG 2931 42.07 MRLNSFTCSSRLPSFLNPPNVARIASCSTSDCISNQLLYEDHNPHSELLQLCLHHCRRIKAHNLFDEKPEPVLQVLRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKVFSRLEKKDVFAWNSVISMYSKHGLFATVVESFVSMWNDGVRPNEFTFAMVLSACSRLLDVNYGRQVHCGVFKMGFGFSSFCQGGLIDMYAKCHDLRDARLVFDGAIYLDTVSWTALIAGYVQDGLPEEAVEVFDRMQTVGLVPDQIALVTVINAYVALDRLGDARKLFAQLPNPNIVAWNVMISGHAKRGFAEEAISFFLELKRTGLKATRSTIGSVLSAIASLSMLNYGLMVHSQVIKEGLNDNVYVGSALVNMYAKCEKMDAANEVFNSLEERNIVLWNAMLAGFAQNGLAHEVMDLFSYMKRISISVVNFITVMIKNKFVSNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFSMFRRMVCNGDLPDEVSLASTVSACANVQELKPGQQCHCLLVKVGLDTSICAGSSLIDMYVKCGVLSAARDVFYSMPCRSVVSVNALIAGYTVNHLEEAIYLFQEMQMVGLKPTEVTFAGLLDGCDGASLLKLGRQVHCQVIKRGFLLGREMVCVSLLCMYMNSQRLSDSETLFSELQYPKSLVLWTAFISGCAQNNHYEKALRFYQHMRSENMLPDQATFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGDVESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFRQMEQQSIMPDDVTFLGVLSACSHAGRVSEGRKIFDVMVSHYRLQPRVDHLGCMVDILGRWGFLNEAEEFINRLGCKADPMLWSTLLGACRKHGDEVRGRRAAEKLMELKPQSSSPYVLLSSIYAASENWKQADSLRREMKSKGVKKLPGYSWIEPGRSARGSSYTIQEPSSNT 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6344340 6347334 + Carg27259-RA Car09g00987 154724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 776 IPR002885 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Car09g00987 976 Pfam E motif 897 957 IPR046848 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Car09g00987 976 Pfam PPR repeat 447 470 IPR002885 -
Car09g00987 976 Pfam PPR repeat 548 573 IPR002885 -
Car09g00987 976 Pfam PPR repeat 367 394 IPR002885 -
Car09g00987 976 Pfam PPR repeat 395 423 IPR002885 -
Car09g00987 976 Pfam PPR repeat 748 777 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 124 172 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 574 619 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 473 520 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 778 825 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 226 272 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 291 338 IPR002885 -
Car09g00987 976 Pfam PPR repeat family 676 722 IPR002885 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Car09g00987 976 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00987 - - - cmax:111473755 1842.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00987 Car-Chr9:6344340 Car08g00306 Car-Chr8:1962062 4.79E-12 dispersed
Car09g00987 Car-Chr9:6344340 Car17g01117 Car-Chr17:8612112 2.64E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1213 . Blo12g01108 . Bda03g00030 . Bpe04g00020 Bma04g00028 . . Cmo12g00334 . Cma09g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01097 . . . Car09g00987 . . Bhi09g01512 . . . . . . Cla09g00917 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011120 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 3 1 0 1 0 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00987 Car_Chr09 FPKM 53.140564 57.166859 7.001765 9.248956 4.781881 4.391365 5.013025 6.736829 7.818901 6.917344