Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00988 ATGGGTCTGTGGGTTTTTGATGGGGTTTTGCTTGTGCTTGGTTTTTTCTGGTTACTGAGCAGCGGCGGCAGAGTTGAGGGTTTTCCTAGTGAAGATCTGGTGCTGCGGCTGCCGGGACAGCCGCCTGTTGGGTTCAAACAGTATGCTGGGTATGTCGATGTGGATGTCAAAAATGGAAGGAGCTTGTTCTACTATTTCGTTGAAGCAGAGCAGCAGCCAGAGATCAAACCTCTCACTCTATGGCTCAATGGAGGGCCTGGTTGTTCTTCCGTTGGTGGAGGTGCTTTCACAGAGTTGGGTCCTTTTTATCCCACTGGGGATGGAAGAGGCCTTAGGACAAACCCCATGTCTTGGAATAAAGCTTCAAATCTTCTGTTTGTTGAATCTCCTGCTGGAGTTGGATGGTCATATTCAAACACAAGTTCAGATTATGACTGTGGAGATGCCTCTGCTGCCAGGGATATGCATATGTTTATGATGAATTGGTACGAGAAGTTTCCATCGTTCAAAGCTAGAGCGTTGTATCTTACGGGCGAAAGTTATGCAGGGCATTACATACCACAGTTGGCTATTGCTCTGTTGGATCATAATGCAAAGTCCAGTGGTTTCAAGTTCAATATCAAAGGAGTTGCTATCGGGAACCCTCTATTGAAACTCGATAGAGATGTTCCAGCATCGTACGAGTTTTATTGGTCGCATGGGATGATTTCGGATGAAATCGGTCTAACCATCATGAACGAATGTGATTTCGAGGATTATACTTTTTCGAGTCCTCACAATGTGACACATTCGTGCAATGAAGCCATATCCATAGCGAACCACATTGTTGGCGATTACATAAACTATTACGACGTCATCCTCGACGTGTGCTATCCATCTATAGTGGAGCAAGAGCTACGGTTGAAGAAAATGGCTACTAAAATAAGCTTGGGGGTCGATGTGTGCATGACCATGGAAAGACGATTCTACTTCAACCTTCCAGAGGTTCAGAAAGCGCTTCATGCTAATCGAACTAAATTACCTTACAGCTGGTCGATGTGCAGTTCTCTAATAAATTACAGCGACACGGATGGTAACATCGACATACTTCCATTGCTCAAACGGATAATCGAAAATCGAATTCCCGTTTGGGTTTTCAGTGGGGATCAAGATTCTGTCGTACCCTTGTTGGGATCTCGAACGCTCGTCCGTGAACTCGCTCATGATATGAAATTCAAGATCACGGTCCCATACGGGACTTGGTTCCACAAAGGCCAGGTCGGAGGTTGGGCGATCGAGTATGGAAATCTGTTGACGTTTGCGACAGTAAGAGGCGCTGCTCATATGGTACCTTATGCGCAGCCATCAAGAGCATTACATCTGTTTAGTTCATTTATTCATGGTCGGAGACTGCCCAATTCAACTCGCCTGTCGATCGAAGATTAG 1425 45.68 MGLWVFDGVLLVLGFFWLLSSGGRVEGFPSEDLVLRLPGQPPVGFKQYAGYVDVDVKNGRSLFYYFVEAEQQPEIKPLTLWLNGGPGCSSVGGGAFTELGPFYPTGDGRGLRTNPMSWNKASNLLFVESPAGVGWSYSNTSSDYDCGDASAARDMHMFMMNWYEKFPSFKARALYLTGESYAGHYIPQLAIALLDHNAKSSGFKFNIKGVAIGNPLLKLDRDVPASYEFYWSHGMISDEIGLTIMNECDFEDYTFSSPHNVTHSCNEAISIANHIVGDYINYYDVILDVCYPSIVEQELRLKKMATKISLGVDVCMTMERRFYFNLPEVQKALHANRTKLPYSWSMCSSLINYSDTDGNIDILPLLKRIIENRIPVWVFSGDQDSVVPLLGSRTLVRELAHDMKFKITVPYGTWFHKGQVGGWAIEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFIHGRRLPNSTRLSIED 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6348708 6351783 - Carg27260-RA Car09g00988 154725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00988 474 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Car09g00988 474 Pfam Serine carboxypeptidase 39 461 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00988 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - csv:101210351 873.233
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02338 Car09g00988 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00737 Car-Chr6:4894525 Car09g00988 Car-Chr9:6348708 5.48E-127 dispersed
Car09g00988 Car-Chr9:6348708 Car10g00016 Car-Chr10:89680 1.36E-134 dispersed
Car15g00572 Car-Chr15:3166544 Car09g00988 Car-Chr9:6348708 0 wgd
Car04g02338 Car-Chr4:18819312 Car09g00988 Car-Chr9:6348708 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00988 Car_Chr09 FPKM 1.859503 1.666346 0.590612 0.795609 2.154502 2.399776 1.754203 0.270268 0.0 0.200689