Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00993 ATGGAAGCAGGAAAGGTTGATATTTGTCAGCAATGTGGAGACACTGGTTTTATTGAGGCTTTAAATTATTGTAAAATATGTCGGACTTATCCCATCCATCGCTATTGCTTGGATAAATTGCCAAAAACTTTTGATGAGTATGTTACTTGGTTTTGTGAAGATTGTGAGGCAACAGTGGCGCCAATAGTAAAATCTAAAGTTAAATTAAAAGAGAAAAAGCTTATCAAACGACTGAAGAAGAAATGGAAGGCAATGATGAAAAGTAATGCGAACGATGATAAAAATCAAAGTAGTCGTCCTCTTCAACTTCCCGACGCACATTGCGGCGGAAAGAATGATACAGCACCTGGAGGGCCGGGAGAGCTAGTTCGTGAAGGTGGAACCAATCATGATGAAGTCGCTGCATCGTCTGATACATCTGATTTCTTAAGGCACAACTGTTATGTTGCACAACCTATAGTTGATCCGGTTTGGAGGGGAACTTTAGAAGTTTGGAACCAAAGTTTTGGCGGAGTTTGTGTACTTGTTGCTCATATGTCTAGCTTAGCATGCTCAAAAGTGTACGAGGAGGCAAAAACGTTACCCGAGTTACTTTCCATTGAAATACTTCGTAGATCCGATATATGGCCAAAAGGATTCGAGAAATTGGGGCCAACTGATCAAAGTATTGCTCTTTATTTCTTTGCAGAAGGGGAAAGAAGCCAAAAGGCGTTTGATCTTCTCATCAATTCAATGATGAGCCAGGACCTAGCCATGAAGACTGTGTTGAAGAATGCAGAGCTATTAGTTTTTACTTCGTCCGTGTTACCGATGCGATATTGGAGATTTCAGACAAAGTACTATTTGTGGGGCGTCTTTCGTGCGAAGCGAGCTGCACAACCGAGAAAGAATGTGGCTTCTGAGGAGAGAACTTTTACTGAGTCATCACCTTGTATACAAAGCCCTATAAGTCCTACAAGCCCTTTAAGCAACACCAGTGTTCTTCATTCTGGGTCGCTTCGTTCTTGCTCGCCTCTACCATGA 1023 41.84 MEAGKVDICQQCGDTGFIEALNYCKICRTYPIHRYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKSNANDDKNQSSRPLQLPDAHCGGKNDTAPGGPGELVREGGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWRGTLEVWNQSFGGVCVLVAHMSSLACSKVYEEAKTLPELLSIEILRRSDIWPKGFEKLGPTDQSIALYFFAEGERSQKAFDLLINSMMSQDLAMKTVLKNAELLVFTSSVLPMRYWRFQTKYYLWGVFRAKRAAQPRKNVASEERTFTESSPCIQSPISPTSPLSNTSVLHSGSLRSCSPLP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6420450 6427383 - Carg27265-RA Car09g00993 154730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00993 340 MobiDBLite consensus disorder prediction 297 340 - -
Car09g00993 340 MobiDBLite consensus disorder prediction 86 127 - -
Car09g00993 340 MobiDBLite consensus disorder prediction 303 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00993 - - - bhj:120086715 486.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00881 Car09g00993 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00303 Car-Chr2:2047286 Car09g00993 Car-Chr9:6420450 1.97E-18 dispersed
Car09g00993 Car-Chr9:6420450 Car20g00772 Car-Chr20:4570998 9.86E-22 dispersed
Car01g00881 Car-Chr1:8081487 Car09g00993 Car-Chr9:6420450 1.16E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1242 . . . . . . . . . . Cma01g00990 . Car01g00881 . . Cpe06g00895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g1573 Cmo01g01027 . . . . Car09g00993 . . Bhi09g01502 Tan01g3380 Cmetu01g2157 . . . . Cla09g00923 Cam09g0975 Cec09g0980 Cco09g0986 . . Cre09g0944 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005025 1 2 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 0 0 1 1 1 1 11 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00993 Car_Chr09 FPKM 1.446237 0.0 9.026062 5.857465 24.108637 31.131807 29.980553 2.776689 7.736696 7.226493