Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00994 ATGGCAGATCCTGTTAGCTACGGGAATGCTAATCGTAACACCGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAATCATCTTTAATTTGGATTTCAACAACTGGTGAAAAGAGTTTGAAGTTAGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCCGTGTTCCAACGATTTCTGCGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAACGGAAAACGATCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGTTGAAATTTGGATAGCTGGTCTGAAAGCATTAATAGGTTCTGGTGACGGTGGACGTTCCAAGATTGATGGATGGAATGATGGTGGTCTCTATCAAGATGACAACAGTGACCTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGCTCTCCTGAGGTCTGTGTTAGTTTTAGTCCAAATAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCATTGAAACAGACGAATATGCAAGCAAAAGGATCTAGTTCAGATATCTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTCTAGGAGATATATATATATGGGGTGAGGTTATTAGTGATAATTTTAACAAGCCTGGAGCTGATAGTGATATTAGCGTGAACTCAAGGACAGATGTACTACTTCCGAAGCCACTAGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGAGTCAGACATTCTGCCATAGTCACGAGGCAAGGGGAGGTCTTTACATGGGGCGAGGAATCTGGAGGAAGGCTTGGCTTGGGAATGGGGAAGGATGTAACACATCCTCGCCTTGTTGAAGCCTTGGCAGCTACTACCGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACAATGGATGGGGAACTTTATACATGGGGAGATGGTATACATAATGCTGGGCTTCTTGGTAATGGAACATATGTTAGCCATTGGATGCCAAAGAGAATCACAGGTATTCTCGAGGGGCTTCAAGTTGCATCGGTAGCATGTGGCCCATGGCATACAGCACTGATCTCATCTATGGGGCAACTATTCACATTTGGTGATGGTACTTTTGGAGTTTTGGGTCATGGTAACAAAAAAAGCATTTCATATCCAAGAGTAGTAGAGTCTTTATCAGGTTTGAGGACAATTGCTGTTGCATGTGGAGTGTGGCATACTGCCGCTGTGGTAGAAGTTATTATGACTCAATCTAGTACAAGCATCTCATCAGGTAAATTGTTTACATGGGGTGATGGAGACAAGAATCGTTTAGGACATGGAGACAAAGAACCCCGGCTTAAACCTACATGTGTTCCAGCACTAATTGAGTATAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAGCTTGGAAATCCCAATGCTGATGGAAAGCAGCCATGTTTGGTGGAAGATAAGCTTTCTGGGGAATCTGCTGAAGAGGTAGCTTGTGGTGCATATCACGTGATGGTGCTTACCTCTAAAAATGAAATTTATACATGGGGAAAGGGTGCAAATGGGAGGCTAGGCCATGGAGATGTTGAGGATCGGAAATCACCAACTTTGGTTGAAGCTTTGAAGGATAAACATGTCAAAATCATTGCTTGTGGATCTAACTACTCCGCAGCTATTTGTCTTCACAAATCATTGTCAGGTACAGAGCAGTCACAATGCTCTTCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGACACAACTGTTACAACTGTGGACTTGTGCACTGCCACTCATGTAGTTCTAAAAAAGCATTAAGAGCTGCACTGGCTCCTACTCCTCGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCGTCGGAATCTGGAATTAATTACCGGAAGAATGCTGTTCCCCGACTGTCAGGTGAGAGCAGGGATAAGCTGGACAAGAGTGACACAAGACCTCCTAAAACAGCACTTTCCAATATGGATCTGATAAAACAACTAGATAGCAAAGCAGCCAAGCAAGGGAAGAGAACAGATACATTCTCCATTGTTCGCCCCACTCAAGCACATACTCTTCTGCAACTCAAAGATGGTCCAAACACTGTTGATATTCGACGACTAGCTCCCAAGCCAATCCCTATGGCTAATGGAGTTAATTCCAGATCTGTGTCACCTTTGTCCAGAAAATCTAGTCCGCCAAGGTCTGCTACACCTGTTCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCGGATAGCTTGAAAAAAACAAACGAACTTTTAAATCAAGAGGTTCTCATGCTGCGTGCACAGGTTGAGAGCCTGAGAAAGAGATGTGAACTTCAAGAATCAGAACTTCGGAAGTCAGAGAAAAAAGCACAAGAAGCTATTGCTTTGGCTGCAGAGGAATCTACTAAATCCAAATCGGCAAAAGAAGTTATTAAATCGCTTACTGCTCAGATTAAAGATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGCCTTCCTGGAACTATCGACTCTGAAAATGTGAGAACATTAGATCTTCCAAATGGTATGGAGCAAAATGTCGCCCACCATTTGGCTTCCAATGGAGAGCGTCATTCAGAATCTGATTCACACAGCTCCTTGTCGTTGGCTTCTTCAGTAGCAACTGACTATTCCATGAGTAACGGATTTCAGGGTCCAGCGAATACCTCTGGAGAATTCCCTGCAAGTAATGAAACTAACTCATCCTCAGAGCCAGGGCGGTTAACCTCTGATGTGATAGATGATGATCCAGATGTTAGACTCTCTTATGGTCATAGAGGGGTTTGGGAAAGCCGCCGCAGTAGCAGCATGTCGGAGGGAGCAAATAGCTCGGGTCTTTTACTAGATAATGAGAGTAACACAAGATTAAGAAGTTCGGCATCACCAAGCAATGACAATCAAGTTGAAGCTGAATGGATTGAACAATATGAACCTGGTGTATACATAACTTTGATGGCACTTCGTGATGGAACGAGAGATCTTAAACGAGTGCGCTTCAGTCGGAGACGATTTGGAGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGCGACAAAGTCTACGAGAAATATAATGTTCGCGGAACTGAGAAATCCTCAATTTCTTCAAATCCTGCATGA 3354 42.99 MADPVSYGNANRNTEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKLASVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEVEIWIAGLKALIGSGDGGRSKIDGWNDGGLYQDDNSDLTSSSPSDSSNSVTRDISSPEVCVSFSPNKSPTSVRSENSTRSHVPLKQTNMQAKGSSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYIWGEVISDNFNKPGADSDISVNSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTHPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGIHNAGLLGNGTYVSHWMPKRITGILEGLQVASVACGPWHTALISSMGQLFTFGDGTFGVLGHGNKKSISYPRVVESLSGLRTIAVACGVWHTAAVVEVIMTQSSTSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIEYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPNADGKQPCLVEDKLSGESAEEVACGAYHVMVLTSKNEIYTWGKGANGRLGHGDVEDRKSPTLVEALKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGINYRKNAVPRLSGESRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIVRPTQAHTLLQLKDGPNTVDIRRLAPKPIPMANGVNSRSVSPLSRKSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQESELRKSEKKAQEAIALAAEESTKSKSAKEVIKSLTAQIKDMAERLPDGVKMGLPGTIDSENVRTLDLPNGMEQNVAHHLASNGERHSESDSHSSLSLASSVATDYSMSNGFQGPANTSGEFPASNETNSSSEPGRLTSDVIDDDPDVRLSYGHRGVWESRRSSSMSEGANSSGLLLDNESNTRLRSSASPSNDNQVEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGTEKSSISSNPA 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6453846 6462374 - Carg27266-RA Car09g00994 154731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00994 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Car09g00994 1117 Coils Coil 818 866 - -
Car09g00994 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Car09g00994 1117 MobiDBLite consensus disorder prediction 1007 1044 - -
Car09g00994 1117 MobiDBLite consensus disorder prediction 144 207 - -
Car09g00994 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Car09g00994 1117 MobiDBLite consensus disorder prediction 958 986 - -
Car09g00994 1117 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Car09g00994 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Car09g00994 1117 Pfam Transcription factor BRX N-terminal domain 869 899 IPR027988 -
Car09g00994 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Car09g00994 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Car09g00994 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Car09g00994 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Car09g00994 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 346 398 IPR000408 -
Car09g00994 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Car09g00994 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Car09g00994 1117 Coils Coil 874 894 - -
Car09g00994 1117 MobiDBLite consensus disorder prediction 783 813 - -
Car09g00994 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Car09g00994 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Car09g00994 1117 ProSiteProfiles BRX domain profile. 1048 1103 IPR013591 -
Car09g00994 1117 Pfam FYVE zinc finger 626 687 IPR000306 GO:0046872
Car09g00994 1117 MobiDBLite consensus disorder prediction 770 813 - -
Car09g00994 1117 MobiDBLite consensus disorder prediction 703 718 - -
Car09g00994 1117 MobiDBLite consensus disorder prediction 700 749 - -
Car09g00994 1117 MobiDBLite consensus disorder prediction 987 1005 - -
Car09g00994 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Car09g00994 1117 MobiDBLite consensus disorder prediction 958 1044 - -
Car09g00994 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Car09g00994 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1047 1102 IPR013591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00994 - - - cmax:111475331 2130.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00880 Car09g00994 CCT
Car04g02348 Car09g00994 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00293 Car-Chr1:1634522 Car09g00994 Car-Chr9:6453846 0 dispersed
Car09g00994 Car-Chr9:6453846 Car14g00989 Car-Chr14:7475050 0 dispersed
Car01g00880 Car-Chr1:8064384 Car09g00994 Car-Chr9:6453846 0 wgd
Car15g00562 Car-Chr15:3119510 Car09g00994 Car-Chr9:6453846 0 wgd
Car04g02348 Car-Chr4:18865849 Car09g00994 Car-Chr9:6453846 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00994 Car_Chr09 FPKM 0.938182 0.975095 5.544179 4.558133 24.419662 23.22648 26.639151 5.965278 5.871675 5.507803