Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01002 ATGGATGGGATTGGACTTCGATATGTGGGCTCTCATTGCTCAATGTCTGAGATGGATGAGCATGATTTTTCTCGATTTCACGATAAGCCTAAGCTCAATATTGAGAGGCAAAGATCATTTGATGAGAGGTCCCTCAGCGAGCTGTCCATCATCCTTGCTAAGGGAGGCTTGGACAACTTTGAGAGCTCCTATTCACCTGGTGGAAGGTCAGGATTTGATACCCCAGCTTCATCTACCAGAAACTCATTTGAGCCCCACCCAATGATTGCTGAAGCATGGGACTCTTTGCGGAGATCCTTGGTGCATTTTCGGGGCCAACCAGTTGGAACTCTTGCAGCTATTGATCATGCCTCAGAGGAAGTTTTGAATTATGATCAGGTTTTTGTTCGGGATTTTGTACCAAGTGCTTTGGCTTTCCTGATGAATGGGGAACCTGAAATTGTTAAGAACTTCCTGTTAAAGACTCTGCAGCTTCAGGGATGGGAAAAAAGAATAGACAGATTCAAGCTTGGGGAAGGTGCAATGCCAGCTAGCTTTAAGGTTCTTCATGATCCTGTTAGAAAAACCGATACCATTGTTGCTGATTTTGGAGAGAGTGCGATAGGAAGAGTTGCTCCTGTTGACTCTGGATTCTGGTGGATCATTCTGCTCCGTGCTTATACAAAGTCAACTGGGGATCTAACTCTGGCTGAAACACCAGAGTGTCAGAAGGGAATGAGACTTATTTTAACTTTATGTCTGTCGGAGGGGTTTGATACATTCCCAACTCTACTTTGTGCTGATGGTTGCTCCATGATTGATCGAAGGATGGGTATATATGGTTATCCTATAGAAATTCAAGCCCTTTTCTTTATGGCCTTGAGATGTGCTCTGGCTATGCTAAAACATGATGCTGAAGGAAAAGAGTGCATAGAGCGTATTGTGAAGCGTCTGCATGCTTTAAGTTATCACATGAGGAGTTATTTCTGGCTTGATTTCAGCAACTAA 987 43.77 MDGIGLRYVGSHCSMSEMDEHDFSRFHDKPKLNIERQRSFDERSLSELSIILAKGGLDNFESSYSPGGRSGFDTPASSTRNSFEPHPMIAEAWDSLRRSLVHFRGQPVGTLAAIDHASEEVLNYDQVFVRDFVPSALAFLMNGEPEIVKNFLLKTLQLQGWEKRIDRFKLGEGAMPASFKVLHDPVRKTDTIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLAETPECQKGMRLILTLCLSEGFDTFPTLLCADGCSMIDRRMGIYGYPIEIQALFFMALRCALAMLKHDAEGKECIERIVKRLHALSYHMRSYFWLDFSN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6640658 6648715 - Carg23302-RA Car09g01002 154739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01002 328 Pfam Alkaline and neutral invertase 92 327 IPR024746 GO:0033926
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01002 - - - csv:101214631 622.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01002 Car-Chr9:6640658 Car16g00607 Car-Chr16:3884429 4.00E-173 dispersed
Car01g00869 Car-Chr1:7771371 Car09g01002 Car-Chr9:6640658 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1407 . . . . . . . . . . . Cma09g01113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01016 Cmo09g01119 . . . Car09g01002 . . . . . . . . . . . . . . . . . . . Cme01g00805
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01002 Car_Chr09 FPKM 9.814511 10.435903 9.14608 9.101598 11.109187 10.971782 13.421676 11.589855 11.625954 10.755696