Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01018 ATGGAAAATGATGATCTGAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCCTCCGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCGGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCGGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATCCAAATAGACCCAGAAGCGGTGAAGCCACCAAAGAGGAGGAACGTCAAGATTTCAACCGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTTAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCAGCAGCAGCAGCATCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATCACTCACAACCTTGAGCAGTACGGAGATGCTTAA 714 49.16 MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAASGVGFPLEMSSGSYVPMAKPSQITHNLEQYGDA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6823919 6824632 + Carg26318-RA Car09g01018 154755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01018 237 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Car09g01018 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00151 Car-Chr5:762656 Car09g01018 Car-Chr9:6823919 1.02E-51 dispersed
Car07g00781 Car-Chr7:4096880 Car09g01018 Car-Chr9:6823919 5.96E-39 dispersed
Car08g00634 Car-Chr8:4088823 Car09g01018 Car-Chr9:6823919 4.34E-31 dispersed
Car09g01018 Car-Chr9:6823919 Car17g00699 Car-Chr17:6399517 2.08E-31 dispersed
Car09g01018 Car-Chr9:6823919 Car02g00402 Car-Chr2:3100912 1.03E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4104 PF00010 HLH 1.60E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01018 - - bhj:120087062 296.975