Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01034 ATGGCGGATGTGATGCTGATGAAAGATATTGAGGAAACGGCTGATCGGCTTGGGATAGATCTCGCCCAAGTTGATTTTGACGCCATTCGTCTCCCTCCCGGCGAGGATTTCGGAATCATTAGTTTGATGGATTTATTACTTTGTTTTCTGTCTTTCCATGCAATTGCTCAAATTCCTTCGTTGTCTGCAATTATGTATAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATTAAGGATGATGGCCTGTGGATGCCTGTTGATCCTTCTACACAAAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTTGATAGATTTATGAAAGTCCCAGATGAGTGGGCTCCTCCTGAAATCAACCCATATACTCCTGGGGAGAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCGTTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAAGTACCTTCAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAAAAATATCTGGTAACATACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTTCCACTGGAGGAACTGGTGGTGTTGCCGGCTTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGAAGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACCGAGACTTTCTCTCTTATCGACAAAAAGTCTTTGAAGGTCGAAAATGTTATGGATTTTTGCTGGTCCCCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCGAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACGAAGACAAAGAAAAGCACGTACACAGGGTTCGAGCTATTCCGCATAAAGGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAACGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTCATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCGATGCGAAGCACTCACAACAGTGGCCGAGTGTCGAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGAAGATTCATTCTTCTTGCTGGCTTGAAAGGTTTCAACGGGCAGTTGGAGTTCTACAACGTCGATGAGCTGGAGACGATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTACGTTGCAACTGCTGTAACTTCAGTCCACGAGATGGAAAACGGTTTCAACATATGGTCCTTTAATGGAAAGCTTCTCTATCGAATCTTGAAGGATCACTTCTTTCAGTTCGCATGGCGACCAAGGCCACCATCCTTCTTGACCCCGGAGAAAGAGGAAGAGATAGCTAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGACGTATCTATGCTACTGAGCGAGCAGGAGCGCGAGAAACGAAGAATGTTGAAGGAGGAGTGGGAGAAGTGGTTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGCTGTTGCGACAGAAGCTTCGGGATGGTGAAGCCAGTGATGAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTTTGGACGTGACGGAGGAAGTTTTGTCGGATGATTTTGATCAGGAATGA 2238 44.64 MADVMLMKDIEETADRLGIDLAQVDFDAIRLPPGEDFGIISLMDLLLCFLSFHAIAQIPSLSAIMYSDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPSTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGASTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFSTGGTGGVAGLSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFILLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRRMLKEEWEKWLNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVTEEVLSDDFDQE 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7381151 7385301 - Carg27504-RA Car09g01034 154771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01034 745 Pfam Eukaryotic translation initiation factor eIF2A 432 632 IPR013979 -
Car09g01034 745 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 173 IPR000504 GO:0003723
Car09g01034 745 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 74 739 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car09g01034 745 Coils Coil 713 733 - -
Car09g01034 745 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01034 Car-Chr9:7381151 Car11g00027 Car-Chr11:119040 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01034 K03253 - csv:101213144 1396.72