Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01046 ATGTGCCATTATTGTGGTGCTGTGATAACAGATTCGGAGGGCAAAAGGTTGGGGAATGGTAATTCGTTTGATTTAGATGATTCTGGCACCGTGTGTATATGTAAAGTTTGCAAAGAGAACCAGGAGCTCAAAACGATGAATCTGGATAATAAAAGTTCGAGTGAAGCGTTGATGTTAAGTCCAATGCCTTCGCTGTCGAGTTGCGATAGTGATTGTTCAACAGTGGCAAATTTAGATGTCAAGGATGGTCAAGACGGTACAACAAGAAGTAGCCAAGACAGCATCGATTGTAGGCAAGAAAGGATGTCACAGAACTGGAGCGAAGTAGTTCATAGCAACGGTCAACTCAGTGGAAGAGATGATGAAAGTGTAATCACAATTAGCCAAGAGGCAACACACAATGGCTCTGGTGTTCGTGTCAATGCGGAAATTGAGCAATCCCATTCTAATTGGTTGGATACTGATCTATGGGATCCTCCAGAGCCAGAGGACCCACAGGATCATGTGGAGGGTGGGATGGGTTATGACGACGACGACGACGACGACGAGTTTGATGACAGCACAGAATGGAACACGTCAAGTTCCTTTAGTCGCTCTGTGGATGAAGCCAGTGTCAGCTATAGGATTAAAGAGCAAAAACAAAGGGCAATGCAACAGATTATGAATGGGAAGTTCAAGGTGTTCATTGGTCATCTTCTTAAATTCGTAGGCGTTGCCTCATCAGGGGAGGATAGTGAAAATTGGGTGGATATAGTTTCTTCTTTGTCCTGGGAAGCTGCCACATTTTTGAAGCCTGTAGTAAATGGTAAAGCGGTGGATCCAGAAGCTCATGTGAAAGTAAAGTGCATTGCAACAGGAACTCGCAGCCAAAGTCAATTTGTCAAGGGTATGGTATTCAAGAAGCATGCAGCTCACAAGCACATGCCAACACATTGTAAGAACCCAAAGTTAATACTGATTGAAGGCATGCTTGGTGAGGCTCCAATAAGTAGACTGTCTTCATTTAATTCAATGGATCAGGAAAATGATTTTACGAAGCATGTTATAGAGATGATTGAAGTTTGCACCGCAAATGTGATTTTAGTTGAGAAAACTACATCACGAGTTATCCAAGAAGCAATGCTCAAGAAAGGCATGACATTAGTGCTTGATATGAAGCTCCACCGTCTGGAGAGAATAGCTCTTTGTACTGGTTCACCAATTTTGACATCTGAAACTTTAATGAGCCAAAACACAAGACAATGTGATGCTGTTTACTTTGAAAAAATTGTAGAAGAACATGCTGGTCTTTTGGAAGGAGGAAAGAGGCCAACTAAAACTTTAATGTTTATTGAGGGCTGTCCAACACGTTTGGGTTGTACGATTTTGCTGAAAGGAGCTCACAGTGATGAATTGAAGAAGATAAAGGTTGTCGTGCAGATTGCTGTTGTTATGGCATTTCACTTAATGTTGGAGACTTCTTTCCTTGTTGATCAGCGAGCTATGTTTGCAACTATTCCATTTGGTGGAGTACCAGCTACTGTTTCATCCGATCCACAATCACCTTTAGAGCCTTGTAGCCCAAATGCACAAGGTGCTTCTTACGGATCAAACCTGGAGGGGGAACCATATAATCCTGCCATATTTTCTGGACTCTCATCCATTTCTGATTCATTAAAGAGAGTCATGGGAGAAAGTTTTTTCTTAGCTTCTCCCTGTCAGTCGTTTTCTTCTTATTTTGGACATGGAAAAGACCTGAGTGGCTTGGTTGCCAAGTCTGACTCAATTCCCTCTACTCCACCGGAAGCCGATCAATTTGATGTGGAAGTTAGGGGTAGTTCTGATGAAGAGAATTCAATTCATGAACAGTTTGTGCCCCATCAATCAACCTTTGATGAAGGCTTTGGATTCCATGAAACTGCTCCAAACTATTCTGAAGACAAACTGCCGGAGAAGACGCCATTCAATTCTCAGAGTATTTTGGTTTTGATGTCGAGCCGAAATGCTTCGAAGGGAACCATGTGTGAGCAAAGTCATTTCTCACATATTGTGTTCTACAAGAATTTTGATGCTCCTCTCGGGAAATTTTTACAAGAAAATTTACTAAATCAGAAGAACGTCTGCACAGTATGTGGTGAACTGCCGGAAGCTCACTATTACTATTACGCACATTCTCGAAAGCAGCTTTGCATTCAAGTCAAACAGCTTCCAGTCAATAAAGTTTTGCCAGGTGAAACAGAAGGAAAACTTTGGATGTGGAGTCGTTGCAGTAAATGTAAATCTAAGGGAGGACCTTCAAAGTCCACAAAAAGGGTGCTGATCTCTACAGCAGCACGTGGCTTGTCCTTTGGGAAGTTTTTGGAGCTTTGTTTCTCTGATTGTACTTTACCTAGTAAATCATCAGTTTGTGGTCATTCATTGTTTGGGGACTTCCTCTACTTCTTCGGACTGGGCAATATGGTTGCTATGTTCAGATATACGGAGGTAGCAATATATACTGTCTCTATGCCTCCTCAGAAACTGGAGTTCAACAGTTCAATGAGACAAGGTCATCTCATCACAGAAACTGAAAATGTTTACGCGAAAGGGATGATACTTTTCACTGAGATTGCGCAGTTTCTGAAGAAGATCATATCCGAACGTAAAAGTTCAACTGTAAACGACTTTTCTTTGTTAGAAGAAATGTTGAACGAAGAAAGATCAGAATTTGAGCTAAATATTCAAAGTTCTCTTACTAAGAAAGGAAACCCGGACTTCCCTTTTCACAAATATCTCAGTCTGAATCGATTGCTCTGGGAGCTGCTACTAGAATCATGTATTTGGGATAAACGCTTGCAATTATTAACATCAGTGGGTGTTACATTAAACTCTGGCACCTCTGAAAATGTTGAGCCTGAACCAGTCGGACATGAGGGATTAGAATCAATTGCACAAACTGATGATAGAAACGTTCAGCAAGATGTATCAGTCGATGAAAATGCATTACATCCGAAGGAAATTGCAGTCGAACATTTGGATGGAGAGTCCGATGGTGATGAACTTGGTTTACCTTCGGCGACTGAAGTCACGGAGATACCAATTATGGATGATCTGAGCCCCAAACAACTTTCTCGCCAAGGATCGTTGTCAAATGGCTTCAACCATCGCCATTCGGATGATGAGGATCCTCAAGCAGGAAGGGTTCTGTCATCTGGTGATATTCCAAGTTCAACTGGTAATTTGACCTTGGACAAATTGTTCTGGACACCATTTTCGGAGATCCAGCAAATGCGCATGAGGGACATCCAGAGAAGTTATTTTCCCGAACTCAAATCCATCAGTAACTATACTCCAAAACTCTTACCCACAGCCCATGACTTCATCAACAAAGAAGGACAGAAGCTACACATTTTTCTTTCAAATGAGAAGTTTATTGTTTCAGATTACGAGGGCGAACTCTCGAGCATAGTTGCTTGTGTACTTGCTTTGTTGAAGGATCTATCCCTTGAAACAGATCTTCATAATGAGGATAGTAAGGGAGAGGGTCTAAATAAAGTTCCCTCCAATGGATCCTCAGATTCTGATTCGAGCGTCTCTTCAGAAGAACATCAGTTCTCAAGTTTTGACAGGTTAAATTTGTTGGATTCTCTTCTCCCAAAGACTTTCAAGCGAGCCGAACATGAAGGGGTCATAAAGTCACTAGCAAAGGGAAAATATCTTGTGAATTGTCCATATTTCAATCAGTTCCGTGATCTTCGTAGACGATGCTGCCCATCTGAGCTCCATTACATAGCTTCCCTAAGCCGTTGTATACACTGGAATGCAAAAGGCGGGAAGAGCAAATCTTTCTTCGCCAAGACACTTGATGACAGGTTCATTATCAAAGAAATTAAAAGGACCGAATATGAGTCATTTATGAAGTTCGCTCCCGATTATTTCAAGTACATTAATGAATCATTTGACATGGGGAACCAGACCTGCCTCGCTAAAGTTCTTGGAATCTATCAGGTAACAGTGAGAGATCCCAAGAGTGGGAAAGAGGTGAGGCATGAATTGATGGTCATGGAGAATCTCAGTTTCGGTCGCAACATAATTCGCCAATATGATCTTAAAGGAGCTCTACATGCTCGATACAATCCAGCTACTAACGATTTTGGTGAAGTCCTCTTAGATCAGAACTTTGTGAATGACATGAACTCATCTCCCCTCTATGTTAATAATCAAGCAAAGCGTCGGTTGCAACGGGCTATTTGGAATGATACTGCTTTTCTCAATTCTATGAATGTTATGGATTATTCTCTGCTTGTCGGGGTCGATGCCGAGAAGAAGGAACTTGTATGCGGGATTATCGATTACCTTAGACAATACACGTGGGATAAGCAACTAGAGACATGGGCGAAATCCTCCTTGAGACCGAAGAATGTTCTGCCCACTGTTGTCTCTCCGAAGGAGTACAAGAGGAGATTTAGAAAGTTCATGTCTGCACACTTCTTGAGTGTCCCAGATAATTGGTGCCAGCAGCAGAATCTCCATGGGCCATGGGGAGCCTGTGGTGGCACCATAGATCGTGCTTCTTCCCAGACGAACGCCGAAGAAAATGATCTCTCTTCTTGA 4572 42.1 MCHYCGAVITDSEGKRLGNGNSFDLDDSGTVCICKVCKENQELKTMNLDNKSSSEALMLSPMPSLSSCDSDCSTVANLDVKDGQDGTTRSSQDSIDCRQERMSQNWSEVVHSNGQLSGRDDESVITISQEATHNGSGVRVNAEIEQSHSNWLDTDLWDPPEPEDPQDHVEGGMGYDDDDDDDEFDDSTEWNTSSSFSRSVDEASVSYRIKEQKQRAMQQIMNGKFKVFIGHLLKFVGVASSGEDSENWVDIVSSLSWEAATFLKPVVNGKAVDPEAHVKVKCIATGTRSQSQFVKGMVFKKHAAHKHMPTHCKNPKLILIEGMLGEAPISRLSSFNSMDQENDFTKHVIEMIEVCTANVILVEKTTSRVIQEAMLKKGMTLVLDMKLHRLERIALCTGSPILTSETLMSQNTRQCDAVYFEKIVEEHAGLLEGGKRPTKTLMFIEGCPTRLGCTILLKGAHSDELKKIKVVVQIAVVMAFHLMLETSFLVDQRAMFATIPFGGVPATVSSDPQSPLEPCSPNAQGASYGSNLEGEPYNPAIFSGLSSISDSLKRVMGESFFLASPCQSFSSYFGHGKDLSGLVAKSDSIPSTPPEADQFDVEVRGSSDEENSIHEQFVPHQSTFDEGFGFHETAPNYSEDKLPEKTPFNSQSILVLMSSRNASKGTMCEQSHFSHIVFYKNFDAPLGKFLQENLLNQKNVCTVCGELPEAHYYYYAHSRKQLCIQVKQLPVNKVLPGETEGKLWMWSRCSKCKSKGGPSKSTKRVLISTAARGLSFGKFLELCFSDCTLPSKSSVCGHSLFGDFLYFFGLGNMVAMFRYTEVAIYTVSMPPQKLEFNSSMRQGHLITETENVYAKGMILFTEIAQFLKKIISERKSSTVNDFSLLEEMLNEERSEFELNIQSSLTKKGNPDFPFHKYLSLNRLLWELLLESCIWDKRLQLLTSVGVTLNSGTSENVEPEPVGHEGLESIAQTDDRNVQQDVSVDENALHPKEIAVEHLDGESDGDELGLPSATEVTEIPIMDDLSPKQLSRQGSLSNGFNHRHSDDEDPQAGRVLSSGDIPSSTGNLTLDKLFWTPFSEIQQMRMRDIQRSYFPELKSISNYTPKLLPTAHDFINKEGQKLHIFLSNEKFIVSDYEGELSSIVACVLALLKDLSLETDLHNEDSKGEGLNKVPSNGSSDSDSSVSSEEHQFSSFDRLNLLDSLLPKTFKRAEHEGVIKSLAKGKYLVNCPYFNQFRDLRRRCCPSELHYIASLSRCIHWNAKGGKSKSFFAKTLDDRFIIKEIKRTEYESFMKFAPDYFKYINESFDMGNQTCLAKVLGIYQVTVRDPKSGKEVRHELMVMENLSFGRNIIRQYDLKGALHARYNPATNDFGEVLLDQNFVNDMNSSPLYVNNQAKRRLQRAIWNDTAFLNSMNVMDYSLLVGVDAEKKELVCGIIDYLRQYTWDKQLETWAKSSLRPKNVLPTVVSPKEYKRRFRKFMSAHFLSVPDNWCQQQNLHGPWGACGGTIDRASSQTNAEENDLSS 1523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7810570 7817730 - Carg28000-RA Car09g01046 154783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01046 1523 Pfam TCP-1/cpn60 chaperonin family 209 481 IPR002423 GO:0005524
Car09g01046 1523 MobiDBLite consensus disorder prediction 1027 1060 - -
Car09g01046 1523 MobiDBLite consensus disorder prediction 152 195 - -
Car09g01046 1523 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1262 1428 IPR002498 GO:0016307|GO:0046488
Car09g01046 1523 MobiDBLite consensus disorder prediction 1168 1185 - -
Car09g01046 1523 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1161 1483 IPR002498 GO:0016307|GO:0046488
Car09g01046 1523 MobiDBLite consensus disorder prediction 1160 1185 - -
Car09g01046 1523 MobiDBLite consensus disorder prediction 173 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01046 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - csv:101202759 2364.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00762 Car-Chr5:5884518 Car09g01046 Car-Chr9:7810570 0 dispersed
Car09g01046 Car-Chr9:7810570 Car17g00616 Car-Chr17:5791850 1.57E-65 dispersed
Car09g01046 Car-Chr9:7810570 Car04g00938 Car-Chr4:5387847 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01046 Car_Chr09 FPKM 12.380156 13.426105 12.945313 11.36449 11.490454 11.142616 12.745893 13.160428 12.02912 12.706546