Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01048 ATGATGGGCGAGGCCGTGATGGTCAGCTCTCAGGATATGGCGGACGCAGAGAGTATGGGCACTCATAAACCCCTCAGAGATGCCACCTCAAGTCGAGGGTTTAAGTGGGACCGATTTCTGCCCAACATCATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACCCGACAGATTATCACCGCCCTTCTCCGCAAGTGCTGCTACCGAGTGGCTGCTGTTCCTGATGGCTTAAAAGCTTGGGAGATTCTCAAAGAAAGGCCTCGTAGTGTAGATCTTATCTTGGCGGAAATTGAATTGCCATCCATCTCTGGCTTTTCTCTGCTCACTTTGATCATGGAGCACGAGATTTGCAAGAACATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACTGTTTATACATCCATGATGAAAGGTGCAGCAGATTATCTTGTCAAGCCCTTGAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAGGCATCATCCATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCATTCAACTGGGTATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGACTTCGAGGCTGGAAGTAAGATGCAGGAAAATTCAGAGTGTAGGCAGGGAAAAGCATCTCCCAAGAATTTCAAGCTACAGAAAGATGAACATCACATAAATTTGAGTCAAAGATTGGTTATGCACGAAAATGAAGCTGGAGGAGGATTGGCACCAATTACACTAAGCATGGGTATTGAGCCAATCAATGATGGGAGAAGTCCTAATATTCGTAGTGAAGCAGGTGAAAACAAGGATTTGCTTGGCAACCCATCCAGAGATGCCACTGCCTTGAATCATGATAACTACCGACAAAGTTCTCCTTCCAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGAACGTGTTGCAGAAGGACGGGCTACCCTCAAACATTCTAGTGCTTCAGCTTTTACGAGATACACTTTCAGGCCATTGCAAACATTAGAAGCAAAATCAAGCAGTATCTATGACGAACAAAAGGAATCTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGGTACTTCTACCTCTGATACAATTAATCCTACGCCAAGATCAAGTACTTCACACACCGTAATCCCTCTTCAAGTTTCAGTCAAAAACTCGGGCTATAGCTCTTTACCTTCCCCCAAGCTCTGCACACAAGGGGGTACCCCATCGTTTCCATGCCCAACTTTAGTCACTCATCCAGAACCCATCTTTGGAAAACAAACGGTTTATCCCTTAAACCTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGTATCACAACGTAAGCAGTACAACAAGCAGAAAGATAGAAAACTCAGGGCAGTCTACAGAAAATCAAGGCCATATATCGCCTACCACCGATCACAGTGCAAACGGTAGCCTATATGGTGGTAATACTACTCATGTTAGAAGCATGGGATATCCTAGCAGCTGTGGAAACAACAGCAATGTCGATTGCATCGGCATTGCAACGGTTACATCCGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGGAGATTCTCACCGATTCGGTCAAAGAGAAGCAGCTCTATCGAAGTTCCGACTCAAACGAAAAAATAGATGTTACGAGAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCTGAGCAGCGTCCTAGAGTGAAGGGACAATTTGTTCGTAGAGTATACACTGATGCCGAACCCAACACCAATACATACAACGCTTAG 1854 44.44 MMGEAVMVSSQDMADAESMGTHKPLRDATSSRGFKWDRFLPNIMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRSVDLILAEIELPSISGFSLLTLIMEHEICKNIPVIMMSSEDSISTVYTSMMKGAADYLVKPLRRNELRNLWQHVWRRQASSIQEKVEVTSENETASNHSTGYNKNIEKGSDTQSSCTKVDFEAGSKMQENSECRQGKASPKNFKLQKDEHHINLSQRLVMHENEAGGGLAPITLSMGIEPINDGRSPNIRSEAGENKDLLGNPSRDATALNHDNYRQSSPSNNFGSALHLDLSLRRCQPNDFEERVAEGRATLKHSSASAFTRYTFRPLQTLEAKSSSIYDEQKESGSNPEHIGSIAGTSTSDTINPTPRSSTSHTVIPLQVSVKNSGYSSLPSPKLCTQGGTPSFPCPTLVTHPEPIFGKQTVYPLNLENHNLEQFLNQYHNVSSTTSRKIENSGQSTENQGHISPTTDHSANGSLYGGNTTHVRSMGYPSSCGNNSNVDCIGIATVTSESRNEEALFSQGGGDSHRFGQREAALSKFRLKRKNRCYEKKVRYESRKKLAEQRPRVKGQFVRRVYTDAEPNTNTYNA 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8101641 8105059 - Carg21016-RA Car09g01048 154785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01048 617 ProSiteProfiles CCT domain profile. 561 603 IPR010402 GO:0005515
Car09g01048 617 MobiDBLite consensus disorder prediction 175 204 - -
Car09g01048 617 MobiDBLite consensus disorder prediction 270 311 - -
Car09g01048 617 MobiDBLite consensus disorder prediction 366 404 - -
Car09g01048 617 MobiDBLite consensus disorder prediction 474 509 - -
Car09g01048 617 MobiDBLite consensus disorder prediction 1 27 - -
Car09g01048 617 Pfam CCT motif 561 603 IPR010402 GO:0005515
Car09g01048 617 Pfam Response regulator receiver domain 47 158 IPR001789 GO:0000160
Car09g01048 617 MobiDBLite consensus disorder prediction 296 311 - -
Car09g01048 617 ProSiteProfiles Response regulatory domain profile. 46 164 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00951 Car-Chr2:6706772 Car09g01048 Car-Chr9:8101641 0 dispersed
Car07g00932 Car-Chr7:5243918 Car09g01048 Car-Chr9:8101641 1.94E-18 dispersed
Car09g01048 Car-Chr9:8101641 Car12g00620 Car-Chr12:4209855 3.16E-96 dispersed
Car09g01048 Car-Chr9:8101641 Car03g00409 Car-Chr3:4742002 4.28E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4107 PF00072 Response_reg 5.90E-20 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01048 K12130 - csv:101209788 942.569